Browse Element(s) Details


OsAffx.23382.1.S1_at

Description tigr:9629.m02425
TID=OsAffx.23382.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2503011/11dirigent, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25000OsAffx.23380.1.S1_at11/111+14080143..14081268hypothetical protein
LOC_Os01g25010Os.53353.1.S1_at10/111+14084475..14090564oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os01g25020OsAffx.23381.1.S1_at10/111+14096054..14096774hypothetical protein
LOC_Os01g25030OsAffx.23382.1.S1_at11/111+14099479..14100370dirigent, putative
LOC_Os01g25040OsAffx.8372.1.S1_at3/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.8371.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25040OsAffx.3354.1.S1_at1/111+14104596..14109994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25050OsAffx.23383.1.S1_x_at11/111+14110888..14111717hypothetical protein
LOC_Os01g25060OsAffx.484.1.S1_x_at6/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.484.1.S1_at5/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060Os.43636.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25060OsAffx.27704.1.S1_at1/111+14113323..14116969transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23382.1.S1_at--1090--8691Chr01:14100316..14100340 (25 bp)
TGTGCCCTCGTCCAGAATGAGCTCT
LOC_Os01g25030
OsAffx.23382.1.S1_at--955--5271Chr01:14100302..14100326 (25 bp)
GAATGAGCTCTACATGCACCTATAC
LOC_Os01g25030
OsAffx.23382.1.S1_at--824--1111Chr01:14100236..14100260 (25 bp)
AGTGATTACTTCAAGCCAGCCTCAA
LOC_Os01g25030
OsAffx.23382.1.S1_at--373--7611Chr01:14100168..14100192 (25 bp)
GGGCAAATACTGTTGGACGTGCACA
LOC_Os01g25030
OsAffx.23382.1.S1_at--231--6551Chr01:14100141..14100165 (25 bp)
GATTACATTTCCAGTCAGGTCAAAC
LOC_Os01g25030
OsAffx.23382.1.S1_at--529--311Chr01:14099957..14100099 (25 bp)
ATACGAGGTTCAGCGGATCCAGTCT
LOC_Os01g25030
OsAffx.23382.1.S1_at--37--6371Chr01:14099942..14099966 (25 bp)
GATCCAGTCTCCAGGTGATGGGTAC
LOC_Os01g25030
OsAffx.23382.1.S1_at--58--6251Chr01:14099926..14099950 (25 bp)
GATGGGTACGATTCCACAGGATGGC
LOC_Os01g25030
OsAffx.23382.1.S1_at--355--10791Chr01:14099870..14099894 (25 bp)
TTGTTGCTGCACAGGGTATCGTCGA
LOC_Os01g25030
OsAffx.23382.1.S1_at--456--7691Chr01:14099857..14099881 (25 bp)
GGGTATCGTCGAGCATAATGTAATC
LOC_Os01g25030
OsAffx.23382.1.S1_at--445--4491Chr01:14099826..14099850 (25 bp)
GCCGGTGGAGCTTGGACTTATGAAC
LOC_Os01g25030
Target Sequence 
TGTGCCCTCGTCCAGAATGAGCTCTACATGCACCTATACATAAACCAAGTGTATGCTGGACAGAGTACTAACCAATTAGT
AGTGATTACTTCAAGCCAGCCTCAAGGATTTGGTATTACTGTCATCAATGATTGGCCCATAACTGATGGGGCAAATACTG
TTGGACGTGCACAAGGATTACATTTCCAGTCAGGTCAAACAAGCCAAAAGTGGTATACATCCATGAATTTAATCTTCGAG
GATACGAGGTTCAGCGGATCCAGTCTCCAGGTGATGGGTACGATTCCACAGGATGGCGAGTGGAGCATAATTGGAGGTAC
TGGAGAATTTGTTGCTGCACAGGGTATCGTCGAGCATAATGTAATCCAGGAAGCCGGTGGAGCTTGGACTTATGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23382.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis