Browse Element(s) Details


OsAffx.23393.1.S1_at

Description tigr:9629.m02489
TID=OsAffx.23393.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2563011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25600Os.26854.1.S1_at11/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25600Os.38130.1.S1_at10/111+14489154..14495614tetratricopeptide repeat, putative, expressed
LOC_Os01g25610Os.40563.1.S1_x_at11/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25610Os.8466.1.S1_at9/111+14495802..1449790840S ribosomal protein S4, putative, expressed
LOC_Os01g25630OsAffx.23393.1.S1_at11/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.2.S1_x_at3/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25630Os.49396.1.S2_at2/111+14509083..14514014NB-ARC domain containing protein
LOC_Os01g25640Os.47130.4.A1_x_at4/111+14516633..14516956retrotransposon protein, putative, unclassified
LOC_Os01g25650NANA1+14518061..14525452retrotransposon protein, putative, unclassified
LOC_Os01g25660OsAffx.21102.2.S1_x_at11/111+14526784..14527988hypothetical protein
LOC_Os01g25660Os.5406.1.S1_at1/111+14526784..14527988hypothetical protein
LOC_Os01g25670Os.47463.1.S1_x_at5/111+14533588..14534791transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25670Os.14491.2.S1_x_at3/111+14533588..14534791transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25679Os.45173.1.S1_x_at3/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25679OsAffx.20329.1.S1_at3/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25679OsAffx.22385.1.S1_x_at1/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23393.1.S1_at--751--2871Chr01:14510785..14510809 (25 bp)
AAGGGATACGCACAAGCTCCTGAGC
LOC_Os01g25630
OsAffx.23393.1.S1_at--737--6211Chr01:14510745..14510769 (25 bp)
GAGGCCAACTCCTAACACGTCTGGA
LOC_Os01g25630
OsAffx.23393.1.S1_at--1116--191Chr01:14510655..14510679 (25 bp)
ATTTGCACATACGACGTTGCCCTGA
LOC_Os01g25630
OsAffx.23393.1.S1_at--303--6691Chr01:14510640..14510664 (25 bp)
GTTGCCCTGAGCTTAAGTCCATATT
LOC_Os01g25630
OsAffx.23393.1.S1_at--239--9791Chr01:14510627..14510651 (25 bp)
TAAGTCCATATTCGGCAAGCAGAGA
LOC_Os01g25630
OsAffx.23393.1.S1_at--830--51Chr01:14510587..14510611 (25 bp)
ATTGAAGGGCCTTGCAGTGACAACA
LOC_Os01g25630
OsAffx.23393.1.S1_at--967--9091Chr01:14510555..14510579 (25 bp)
TGCTCCTGTGTTGGAACCGTCATCA
LOC_Os01g25630
OsAffx.23393.1.S1_at--1003--1551Chr01:14510475..14510499 (25 bp)
AGCTCCCATCGTTGGTAAAACTCAC
LOC_Os01g25630
OsAffx.23393.1.S1_at--1125--9811Chr01:14510460..14510484 (25 bp)
TAAAACTCACGCTCTGTTACTGCAA
LOC_Os01g25630
OsAffx.23393.1.S1_at--38--4891Chr01:14510378..14510402 (25 bp)
GCTTATAATTATGGAATGCCCTGCT
LOC_Os01g25630
OsAffx.23393.1.S1_at--170--7531Chr01:14510306..14510330 (25 bp)
GTGGAAAGAACTAGACGCCCGTCAT
LOC_Os01g25630
Target Sequence 
AAGGGATACGCACAAGCTCCTGAGCGGTCAACATCAGGTGGAGGCCAACTCCTAACACGTCTGGAGTCACTAACAATAAT
TGAGTGTAAAAGTTTGGTAGAGGTCTTCAACACCCCACCATCTCTCAAGTATTTGCACATACGACGTTGCCCTGAGCTTA
AGTCCATATTCGGCAAGCAGAGACGTGGGTCAACATTAATTGAAGGGCCTTGCAGTGACAACATTGTGTCTGCTCCTGTG
TTGGAACCGTCATCACCAGCTGGGGACCACTTCTCTCCTCCTGAATCACTGGAGTCTCCTCACTCGGGCGAGCTCCCATC
GTTGGTAAAACTCACGCTCTGTTACTGCAAAAGCCTGGCATCATCATCACTACCCAATTCACCGCAAGCGTACTCATCCC
TCCAAGGGCTTATAATTATGGAATGCCCTGCTCTAAAAGTGCTCCCTACATGCCTGCGGCAACGGCTGGGCAGCCTCGAG
TGGAAAGAACTAGACGCCCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23393.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis