Browse Element(s) Details


OsAffx.23402.1.S1_at

Description tigr:9629.m02531
TID=OsAffx.23402.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2606010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26000OsAffx.23399.1.S1_at10/111+14725434..14730633hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g26010OsAffx.23400.1.S1_at11/111+14731883..14732571hypothetical protein
LOC_Os01g26020Os.18293.1.S1_at9/111+14734782..14737053expressed protein
LOC_Os01g26039Os.17002.1.S1_at11/111+14737314..14746988esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os01g26060OsAffx.23402.1.S1_at10/111+14749764..14751621hypothetical protein
LOC_Os01g26070Os.51354.1.S1_at11/111+14751752..14752362expressed protein
LOC_Os01g26080OsAffx.11209.1.S1_at10/111+14760287..14761591hypothetical protein
LOC_Os01g26090OsAffx.11210.1.S1_at11/111+14768659..14769260hypothetical protein
LOC_Os01g26100OsAffx.2089.1.S1_at11/111+14770603..14770962hypothetical protein
LOC_Os01g26110OsAffx.23403.1.S1_at4/111+14774594..14775120hypothetical protein
LOC_Os01g26120Os.1740.1.S1_at11/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os01g26120OsAffx.11211.1.S1_at10/111+14775590..14779707plant integral membrane protein TIGR01569 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23402.1.S1_at--1034--871Chr01:14749848..14749872 (25 bp)
ATGGCCAGCTCAGCGATGGCTCAGC
LOC_Os01g26060
OsAffx.23402.1.S1_at--529--9671Chr01:14749868..14749892 (25 bp)
TCAGCCGGCAACCAGCATGATGAGC
LOC_Os01g26060
OsAffx.23402.1.S1_at--941--7471Chr01:14749918..14749942 (25 bp)
GTGTGGCACGCCAAAGTGCGCAGCA
LOC_Os01g26060
OsAffx.23402.1.S1_at--126--8531NONE
TGGAGACCGGCCAGGTTCTCAGCGA
NONE
OsAffx.23402.1.S1_at--196--2171Chr01:14751233..14751257 (25 bp)
ACACTCCTGAGGTTGGCAACGCTTA
LOC_Os01g26060
OsAffx.23402.1.S1_at--538--11Chr01:14751242..14751266 (25 bp)
AGGTTGGCAACGCTTACCGTATTCA
LOC_Os01g26060
OsAffx.23402.1.S1_at--153--9971Chr01:14751256..14751280 (25 bp)
TACCGTATTCACCAGGCCGTTGATT
LOC_Os01g26060
OsAffx.23402.1.S1_at--176--8831Chr01:14751276..14751300 (25 bp)
TGATTCTCTTCCTCAGGGTGTCCTA
LOC_Os01g26060
OsAffx.23402.1.S1_at--1051--7731Chr01:14751292..14751316 (25 bp)
GGTGTCCTAGCTGAGACGCTGGTAC
LOC_Os01g26060
OsAffx.23402.1.S1_at--662--7991Chr01:14751384..14751408 (25 bp)
GGATGTAGATCCCTTTGGCCATTCG
LOC_Os01g26060
OsAffx.23402.1.S1_at--223--1011Chr01:14751477..14751501 (25 bp)
AGGATTCAGCTCCTTCCTATTAGGG
LOC_Os01g26060
Target Sequence 
ATGGCCAGCTCAGCGATGGCTCAGCCGGCAACCAGCATGATGAGCGCGTGGAGTGTGGCCGGCGGTGCCGGTGTGGCACG
CCAAAGTGCGCAGCAGGAGGTGAAGCTGGTTGAGATGGAGACCGGCCAGGTTCTCAGCGAGCAGCTCCGGTGCCACACTC
CTGAGGTTGGCAACGCTTACCGTATTCACCAGGCCGTTGATTCTCTTCCTCAGGGTGTCCTAGCTGAGACGCTGGTACTC
GGCGGCAGAGGCAGCGCTGTCGTTGGCCTCCCTCGTCGCCATCCGTGCCGTCATGTGGAAGGGCGGGATGTAGATCCCTT
TGGCCATTCGCTAACCGGGGATCATCTCCGGCAGAAGTGGTGGTGGTGGGGGCAGCATTGGAGTTGTCGGCTAGGAATAG
GATTCAGCTCCTTCCTATTAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23402.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis