Browse Element(s) Details


OsAffx.23407.1.S1_at

Description tigr:9629.m02560
TID=OsAffx.23407.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2635011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g26320OsAffx.11215.2.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.1.S1_at11/111+14905597..14910341hypothetical protein
LOC_Os01g26320OsAffx.11215.2.S1_x_at10/111+14905597..14910341hypothetical protein
LOC_Os01g26330NANA1+14918190..14918714retrotransposon protein, putative, unclassified
LOC_Os01g26340OsAffx.2093.1.S1_at11/111+14924827..14925934Dirigent-like protein
LOC_Os01g26350OsAffx.23407.1.S1_at11/111+14930057..14931077hypothetical protein
LOC_Os01g26370Os.9007.1.S1_s_at11/111+14938206..14941824expressed protein
LOC_Os01g26370Os.27319.1.A1_at11/111+14938206..14941824expressed protein
LOC_Os01g26390Os.36236.1.S1_at11/111+14947054..14950788Protein kinase domain containing protein, expressed
LOC_Os01g26390Os.36236.2.S1_x_at11/111+14947054..14950788Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23407.1.S1_at--1150--5091Chr01:14931015..14931039 (25 bp)
GCAAAAACCAGCAGAGTCCGTCTCG
LOC_Os01g26350
OsAffx.23407.1.S1_at--434--9371Chr01:14930993..14931017 (25 bp)
TCGACTCCTCCTGAGTGCCAAGAGA
LOC_Os01g26350
OsAffx.23407.1.S1_at--555--1331Chr01:14930971..14930995 (25 bp)
AGAGGAGCACTCAAGCTGAGGCCAA
LOC_Os01g26350
OsAffx.23407.1.S1_at--440--9111Chr01:14930928..14930952 (25 bp)
TGCTGCAAGCCCAAAGCCTACAGAG
LOC_Os01g26350
OsAffx.23407.1.S1_at--1118--2651Chr01:14930915..14930939 (25 bp)
AAGCCTACAGAGGTCCTGAAGCCAG
LOC_Os01g26350
OsAffx.23407.1.S1_at--978--4411Chr01:14930895..14930919 (25 bp)
GCCAGGATCCAAACAGTCGGGAGAA
LOC_Os01g26350
OsAffx.23407.1.S1_at--137--5051Chr01:14930670..14930881 (25 bp)
GCAGAGCGTGCGAGTTTTCTGATAT
LOC_Os01g26350
OsAffx.23407.1.S1_at--280--8971Chr01:14930615..14930639 (25 bp)
TGAAACCGGCCTCAGTCTGGACTCA
LOC_Os01g26350
OsAffx.23407.1.S1_at--1093--9451Chr01:14930600..14930624 (25 bp)
TCTGGACTCACCTACTTTCTCAAAT
LOC_Os01g26350
OsAffx.23407.1.S1_at--153--2591Chr01:14930536..14930560 (25 bp)
AACGATGAGGCTTGTACTGAGTCTA
LOC_Os01g26350
OsAffx.23407.1.S1_at--613--8151Chr01:14930093..14930516 (25 bp)
GGAAAGCTCTCCTCAAGATTTTGGT
LOC_Os01g26350
Target Sequence 
GCAAAAACCAGCAGAGTCCGTCTCGACTCCTCCTGAGTGCCAAGAGAGGAGCACTCAAGCTGAGGCCAAGACCACATCGC
CATCACCTGCTGCAAGCCCAAAGCCTACAGAGGTCCTGAAGCCAGGATCCAAACAGTCGGGAGAAAACATTGAGGAAAGC
AGAGCGTGCGAGTTTTCTGATATAGAAGCTCTTTTAGATGGAGGGACAAACCCTGAAACCGGCCTCAGTCTGGACTCACC
TACTTTCTCAAATGCTACTCAGGAGGACCATGTTGACTCACATCTTCCAGAGAACGATGAGGCTTGTACTGAGTCTAAGT
TTGATACAGGAAGGGAGGAAAGCTCTCCTCAAGATTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23407.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis