Browse Element(s) Details


OsAffx.23421.2.S1_at

Description tigr:9629.m02647
TID=OsAffx.23421.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g276909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27650OsAffx.23420.1.S1_at11/111+15745777..15747984pentatricopeptide, putative
LOC_Os01g27660OsAffx.10637.4.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.1.S1_s_at5/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.3.S1_s_at3/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27660OsAffx.10637.2.S1_at1/111+15753689..15757454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_x_at5/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27670OsAffx.32056.1.S1_at3/111+15758784..15761808transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g27680OsAffx.23421.1.S1_s_at11/111+15765890..15767242hypothetical protein
LOC_Os01g27690OsAffx.23421.2.S1_at9/111+15767883..15769001hypothetical protein
LOC_Os01g27700OsAffx.30603.4.S1_x_at11/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27700OsAffx.30603.2.S1_x_at1/111+15772324..15774499Multicopper oxidase family protein, expressed
LOC_Os01g27710NANA1+15775867..15776478hypothetical protein
LOC_Os01g27720Os.19624.1.S1_at5/111+15780486..15784678zinc finger family protein, putative, expressed
LOC_Os01g27730Os.6742.1.S1_at11/111+15788950..15793626expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23421.2.S1_at--709--9411Chr01:15768854..15768878 (25 bp)
TCGTCCTCATTCTCCGTGGAAGACT
LOC_Os01g27690
OsAffx.23421.2.S1_at--874--9271Chr01:15768842..15768866 (25 bp)
TCCGTGGAAGACTACCTCGTGAACA
LOC_Os01g27690
OsAffx.23421.2.S1_at--358--1411NONE
AGACTACCTCGTGAACAGTTCTGGC
NONE
OsAffx.23421.2.S1_at--974--1751NONE
ACCTCGTGAACAGTTCTGGCTCGGG
NONE
OsAffx.23421.2.S1_at--110--5791Chr01:15768220..15768244 (25 bp)
GACGACATCGGCTGGTTCTGCGTCT
LOC_Os01g27690
OsAffx.23421.2.S1_at--1004--3231Chr01:15768185..15768209 (25 bp)
CAAGCTGCTCGTGGCAGCACCAGAT
LOC_Os01g27690
OsAffx.23421.2.S1_at--60--1511Chr01:15768170..15768194 (25 bp)
AGCACCAGATGTAGCCAAGGCTGTC
LOC_Os01g27690
OsAffx.23421.2.S1_at--1007--1931Chr01:15767990..15768014 (25 bp)
ACGGCGGCAGCCAAGATACCGACGG
LOC_Os01g27690
OsAffx.23421.2.S1_at--1108--1691Chr01:15767982..15768006 (25 bp)
AGCCAAGATACCGACGGTGCTGATG
LOC_Os01g27690
OsAffx.23421.2.S1_at--545--7311Chr01:15767966..15767990 (25 bp)
GTGCTGATGCTGTCCGTGGAGCGGC
LOC_Os01g27690
OsAffx.23421.2.S1_at--747--8171Chr01:15767938..15767962 (25 bp)
GGAAGAACTGGGAGTTCCTGACCAA
LOC_Os01g27690
Target Sequence 
TCGTCCTCATTCTCCGTGGAAGACTACCTCGTGAACAGTTCTGGCTCGGGTACCTCCGCGGCTGCGTCGACTGGGAGGCC
TCACCAACGACGACATCGGCTGGTTCTGCGTCTCCTACGCCTCCAAGCTGCTCGTGGCAGCACCAGATGTAGCCAAGGCT
GTCCTAGTGATCGCCGACGAGTTCGGGGTGCCGCGCAGGATGCGACCATTCAAGGACGTCATTGTCGCAGCGTTCCTCTT
GAAACCGGAGCATCTCGCCTGGAAGGCGGCCTTCTTCAGGGACGAGCAGAGCTCGGGTGGACGGAGGCGCAGGTGAAGAC
GGCGGCAGCCAAGATACCGACGGTGCTGATGCTGTCCGTGGAGCGGCTGAGGAAGAACTGGGAGTTCCTGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23421.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis