Browse Element(s) Details


OsAffx.23483.1.S1_x_at

Description gb:NM_193795.1
DB_XREF= gi:34914673
GEN=B1075D06.9
TID=OsAffx.23483.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1075D06.9 (B1075D06.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g331305/11hypothetical protein
LOC_Os08g275901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33100OsAffx.19542.3.S1_x_at7/111+18537707..18541929retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g33110Os.49812.1.S1_at11/111+18556167..18559937Protein kinase domain containing protein, expressed
LOC_Os01g33120OsAffx.11293.1.S1_at10/111+18560932..18563852hypothetical protein
LOC_Os01g33130OsAffx.23483.2.S1_at10/111+18564259..18565286hypothetical protein
LOC_Os01g33130OsAffx.23483.1.S1_x_at5/111+18564259..18565286hypothetical protein
LOC_Os01g33136OsAffx.3613.1.S1_x_at3/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.27522.1.S1_x_at2/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.278.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136OsAffx.3613.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33136Os.27101.1.S1_at1/111+18567322..18572566retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33142Os.31929.3.S1_x_at2/111+18573558..18576955hypothetical protein
LOC_Os01g33142Os.23706.1.A1_x_at1/111+18573558..18576955hypothetical protein
LOC_Os01g33150NANA1+18580831..18582406retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g33160NANA1+18586411..18589398hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23483.1.S1_x_at--399--1271Chr01:18564958..18564982 (25 bp)
AGATCAAATCCCTTGAAGCCCGGCT
LOC_Os01g33130
OsAffx.23483.1.S1_x_at--392--1671Chr01:18564995..18565019 (25 bp)
AGCCGCTGCTGAAGCTTTGGTGCCA
LOC_Os01g33130
OsAffx.23483.1.S1_x_at--192--5751Chr01:18565022..18565046 (25 bp)
GACGGAGTCCGCCAGACATGCTTGC
LOC_Os01g33130
OsAffx.23483.1.S1_x_at--445--1411Chr01:18565035..18565059 (25 bp)
AGACATGCTTGCTACACCCTTCGGC
LOC_Os01g33130
OsAffx.23483.1.S1_x_at--412--1971Chr01:18565068..18565092 (25 bp)
ACTGACCTTGCAGCACGTGCGGAGG
LOC_Os01g33130
OsAffx.23483.1.S1_x_at--839--4551Chr01:18565093..18565338 (25 bp)
GCGCTCCGGGCCTTCCTAAAGGGCT
NONE
OsAffx.23483.1.S1_x_at--524--8411Chr01:18565322..18565346 (25 bp)
GGCCTTCCTAAAGGGCTTCTTGGAG
NONE
OsAffx.23483.1.S1_x_at--710--1032Chr08:16690620..16690639 (20 bp)
AGGTCTGGCGCGAAGACCCGGCTTC
LOC_Os08g27590
OsAffx.23483.1.S1_x_at--259--4271Chr01:18565373..18565397 (25 bp)
CCGGCTTCGTGAGCAACTGGAGAAG
NONE
OsAffx.23483.1.S1_x_at--1136--4211Chr01:18565417..18565441 (25 bp)
CCGCTGCCACCAATACTTCTGAAGA
NONE
OsAffx.23483.1.S1_x_at--210--9891Chr01:18565430..18565454 (25 bp)
TACTTCTGAAGAGCTAGGGCCGTTG
NONE
Target Sequence 
AGATCAAATCCCTTGAAGCCCGGCTTGGCTCGGTGGAAGCCGCTGCTGAAGCTTTGGTGCCAGCGACGGAGTCCGCCAGA
CATGCTTGCTACACCCTTCGGCTGGCCCTCACTGACCTTGCAGCACGTGCGGAGGGCGCTCCGGGCCTTCCTAAAGGGCT
TCTTGGAGAGTGGTGGGAGGTCTGGCGCGAAGACCCGGCTTCGTGAGCAACTGGAGAAGATGGAGAAAGCCGAAGGCGCC
GCTGCCACCAATACTTCTGAAGAGCTAGGGCCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23483.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis