Browse Element(s) Details


OsAffx.23492.1.S1_at

Description tigr:9629.m03144
TID=OsAffx.23492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3355011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33490Os.53265.1.S1_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33490OsAffx.8942.1.S1_x_at11/111+18765185..18766453F-box domain containing protein, expressed
LOC_Os01g33500NANA1+18768366..18768572hypothetical protein
LOC_Os01g33510OsAffx.2139.2.S1_at11/111+18771261..18771817hypothetical protein
LOC_Os01g33514Os.8289.1.A1_at11/111+18773839..18775776expressed protein
LOC_Os01g33520OsAffx.21182.2.S1_x_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.1.S1_at11/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.2.S1_at10/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33520OsAffx.21182.3.S1_x_at2/111+18776842..18779899Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g33530OsAffx.11302.2.S1_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.2.S1_s_at11/111+18782769..18785003hypothetical protein
LOC_Os01g33530OsAffx.11302.1.S1_at1/111+18782769..18785003hypothetical protein
LOC_Os01g33540Os.25513.1.S1_at11/111+18786069..18789030transposon protein, putative, unclassified, expressed
LOC_Os01g33550OsAffx.23492.1.S1_at11/111+18791153..18791679hypothetical protein
LOC_Os01g33560NANA1+18798783..18799568hypothetical protein
LOC_Os01g33569OsAffx.10792.1.S1_at1/111+18802187..18802483NA
LOC_Os01g33580OsAffx.11392.1.S1_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.4.S1_s_at11/111+18808964..18810421hypothetical protein
LOC_Os01g33580OsAffx.11392.2.S1_x_at3/111+18808964..18810421hypothetical protein
LOC_Os01g33590Os.46314.3.S1_at2/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.265.1.S1_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g33590OsAffx.7362.1.S1_x_at1/111+18812074..18815124transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23492.1.S1_at--346--8491Chr01:18791184..18791208 (25 bp)
TGGCTGTCCTCGGATCCTTGGCCAT
LOC_Os01g33550
OsAffx.23492.1.S1_at--411--3611Chr01:18791200..18791355 (25 bp)
CTTGGCCATTCTGTCACAATCTGAA
LOC_Os01g33550
OsAffx.23492.1.S1_at--135--811Chr01:18791372..18791396 (25 bp)
ATGGTGACAAGTCCACGGTGGATCT
LOC_Os01g33550
OsAffx.23492.1.S1_at--1036--1911Chr01:18791386..18791410 (25 bp)
ACGGTGGATCTGTGCTCAGAGTCAA
LOC_Os01g33550
OsAffx.23492.1.S1_at--1115--1091Chr01:18791410..18791434 (25 bp)
AGTGGAGGGCAGTACTGCTGCTTCC
LOC_Os01g33550
OsAffx.23492.1.S1_at--998--4911Chr01:18791429..18791453 (25 bp)
GCTTCCCTGGAAATGGTTGCTACCC
LOC_Os01g33550
OsAffx.23492.1.S1_at--709--4851Chr01:18791447..18791471 (25 bp)
GCTACCCGGACAGAGCACAGTGTAT
LOC_Os01g33550
OsAffx.23492.1.S1_at--579--5071Chr01:18791503..18791527 (25 bp)
GCACCAAGGACATTATTGCACCTCC
LOC_Os01g33550
OsAffx.23492.1.S1_at--110--3771Chr01:18791538..18791562 (25 bp)
CTCTCACCGTAACCGATGTGCAATA
LOC_Os01g33550
OsAffx.23492.1.S1_at--215--7951Chr01:18791567..18791591 (25 bp)
GGATATGCCAAGAAATCTGTCATCT
LOC_Os01g33550
OsAffx.23492.1.S1_at--747--3051Chr01:18791580..18791604 (25 bp)
AATCTGTCATCTTTGTCTTGAAACA
LOC_Os01g33550
Target Sequence 
TGGCTGTCCTCGGATCCTTGGCCATTCTGTCACAATCTGAAAGCACCAGTGACATGGATGGTGACAAGTCCACGGTGGAT
CTGTGCTCAGAGTCAAGTGGAGGGCAGTACTGCTGCTTCCCTGGAAATGGTTGCTACCCGGACAGAGCACAGTGTATAAG
TGCTGCAAAGACTGGAAGAACACCAACTGCACCAAGGACATTATTGCACCTCCCTCTCCCTCCCTCTCACCGTAACCGAT
GTGCAATAACAAGGATATGCCAAGAAATCTGTCATCTTTGTCTTGAAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis