Browse Element(s) Details


OsAffx.23514.2.S1_at

Description tigr:9639.m03955
TID=OsAffx.23514.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=gene_id:MJG14.20, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4286010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42810OsAffx.19342.1.S1_at11/1111+25284795..25288147hypothetical protein
LOC_Os11g42820NANA11+25291315..25291840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42830NANA11+25293541..25295784retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42840OsAffx.31447.1.S1_at10/1111+25298367..25303229hypothetical protein
LOC_Os11g42840Os.51348.1.S1_x_at1/1111+25298367..25303229hypothetical protein
LOC_Os11g42850Os.53511.1.S1_at11/1111+25304928..25309114expressed protein
LOC_Os11g42860OsAffx.23514.2.S1_at10/1111+25310195..25316745hypothetical protein
LOC_Os11g42870OsAffx.31448.1.S1_at11/1111+25321520..25321986hypothetical protein
LOC_Os11g42880Os.21390.1.S1_at10/1111+25327951..25332150expressed protein
LOC_Os11g42890OsAffx.31449.1.S1_at11/1111+25333252..25337274hypothetical protein
LOC_Os11g42900OsAffx.23514.3.S1_at11/1111+25339318..25345715hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23514.2.S1_at--735--3091Chr11:25311951..25311975 (25 bp)
AATACATTTTGGCACGTCTTCGAGA
LOC_Os11g42860
OsAffx.23514.2.S1_at--794--5011Chr11:25311733..25311756 (24 bp)
GCAGGATTTTCAGTGGAACCTATCT
LOC_Os11g42860
OsAffx.23514.2.S1_at--497--2831Chr11:25311599..25311623 (25 bp)
AAGTTCATGGTGTTATCGGCAGTAA
LOC_Os11g42860
OsAffx.23514.2.S1_at--901--2831NONE
AAGTCAACTCTGAGGAGGCCCTGTT
NONE
OsAffx.23514.2.S1_at--125--8011Chr11:25310549..25310573 (25 bp)
GGAGGCCCTGTTCAGAATCTCGGCA
LOC_Os11g42860
OsAffx.23514.2.S1_at--116--5251Chr11:25310535..25310559 (25 bp)
GAATCTCGGCACACAACCGTGTGGA
LOC_Os11g42860
OsAffx.23514.2.S1_at--148--8571Chr11:25310514..25310538 (25 bp)
TGGATGCCGCTGAGCCAGAAAATCT
LOC_Os11g42860
OsAffx.23514.2.S1_at--1014--5571Chr11:25310472..25310496 (25 bp)
GAAATGTCATGGTCGGCTGTTTCCG
LOC_Os11g42860
OsAffx.23514.2.S1_at--385--10831Chr11:25310446..25310470 (25 bp)
TTGTCCTACAACTACTTCTATCTCA
LOC_Os11g42860
OsAffx.23514.2.S1_at--342--9711Chr11:25310424..25310448 (25 bp)
TCAAGCCTGGAGAAGTCTACTGGTA
LOC_Os11g42860
OsAffx.23514.2.S1_at--66--2791Chr11:25310395..25310419 (25 bp)
AAGAGCAAGCCATATGTCCACTCCA
LOC_Os11g42860
Target Sequence 
AATACATTTTGGCACGTCTTCGAGACCAAAAAGGTGCTGCAGGATTTTCAGTGGAACCTATCTGTGGATAATTTAAAGAG
TCAATATGAGCATCATGAATCTACAGAATTTGGATCAGAGGAAAAAAACAAGAGGGGCAAGCACAGATTGGAATCTGCAT
TGGATATATTAAAAGTTCATGGTGTTATCGGCAGTAATGAAGTCAACTCTGAGGAGGCCCTGTTCAGAATCTCGGCACAC
AACCGTGTGGATGCCGCTGAGCCAGAAAATCTAAGATCTATTGAGGATGGAAATGTCATGGTCGGCTGTTTCCGCTTGTC
CTACAACTACTTCTATCTCAAGCCTGGAGAAGTCTACTGGTATGATAAGAGCAAGCCATATGTCCACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23514.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis