Browse Element(s) Details


OsAffx.23517.1.S1_x_at

Description tigr:9629.m03301
TID=OsAffx.23517.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc finger, C3HC4 type (RING finger), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3510011/11Zinc finger, C3HC4 type family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35059NANA1+19741055..19741451NA
LOC_Os01g35070NANA1+19742726..19748177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35080Os.46995.1.S1_x_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35080Os.46995.1.S1_at1/111+19751547..19753930retrotransposon protein, putative, unclassified
LOC_Os01g35090NANA1+19754087..19759617retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35100OsAffx.23517.1.S1_x_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35100OsAffx.23517.1.S1_at11/111+19761141..19761926Zinc finger, C3HC4 type family protein
LOC_Os01g35110NANA1+19763790..19764284hypothetical protein
LOC_Os01g35120OsAffx.2155.1.S1_x_at11/111+19764748..19765539Zinc finger, C3HC4 type family protein
LOC_Os01g35129NANA1+19769162..19769374hypothetical protein
LOC_Os01g35140OsAffx.447.1.S1_at3/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.2.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.52609.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149NANA1+19777544..19777756hypothetical protein
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23517.1.S1_x_at--36--7431Chr01:19761629..19761653 (25 bp)
GTGTTCACCGGGATGCGGGAGCTCC
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--939--9211Chr01:19761538..19761562 (25 bp)
TCCACCGCGCGGTGAGGCGGAACCA
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--679--8711Chr01:19761526..19761550 (25 bp)
TGAGGCGGAACCACGACGACGGCCT
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--474--1611Chr01:19761454..19761478 (25 bp)
AGCTGGTGTTCAGCGAGCCCGTGTC
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--374--2171Chr01:19761388..19761412 (25 bp)
ACACCTGCGGGATCTGCCTGGACGG
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--920--4471Chr01:19761364..19761388 (25 bp)
GCCTGACGGCCAGCGAGAGGTGCAA
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--883--3991Chr01:19761295..19761319 (25 bp)
CGTGCATCACCAGGTGGCTGTTCAA
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--172--4971Chr01:19761292..19761316 (25 bp)
GCATCACCAGGTGGCTGTTCAAGGG
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--540--6271Chr01:19761201..19761225 (25 bp)
GATGTCGTGCCCTGGGTGCATCATG
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--160--7771Chr01:19761187..19761211 (25 bp)
GGTGCATCATGCCATCCACGCCGTG
LOC_Os01g35100
OsAffx.23517.1.S1_x_at--904--3351Chr01:19761171..19761195 (25 bp)
CACGCCGTGCGTCGAAGATTGCCCG
LOC_Os01g35100
Target Sequence 
GTGTTCACCGGGATGCGGGAGCTCCGCTGCGTCGACCTCTCCCGCAGCAACTGGGCGACGCCCATGCCCGACGACGACGC
CGCCGCGTGGATCCACCGCGCGGTGAGGCGGAACCACGACGACGGCCTCGCCGGCGGCCACTACCGCTTCGCCGCGCGCG
TGAAGGTGGCGGTGGAGCTGGTGTTCAGCGAGCCCGTGTCGCTCGTCCGCGGGCTGGTCTGGCTGGAGACGCGCGCCGGC
GACACCTGCGGGATCTGCCTGGACGGCCTGACGGCCAGCGAGAGGTGCAAGACGCCGCCGGCGAACCTGCCGTGCGGGCA
CGCGTTCCACCCGCCGTGCATCACCAGGTGGCTGTTCAAGGGGACCACCTGCCCGATCTGCCGCGACGACCTCACCGGCC
TCGCCGCCGCGCCATGGGAGAGCGGCGTGATGTCGTGCCCTGGGTGCATCATGCCATCCACGCCGTGCGTCGAAGATTGC
CCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23517.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis