Browse Element(s) Details


OsAffx.23600.1.S1_x_at

Description gb:NM_192520.1
DB_XREF= gi:34912123
GEN=OSJNBb0024F06.14
TID=OsAffx.23600.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0024F06.14 (OSJNBb0024F06.14), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g402509/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40200Os.25233.1.S1_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200Os.25233.1.S1_x_at11/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40200OsAffx.23597.1.S1_x_at7/111+23010748..23014542DIL domain containing protein, expressed
LOC_Os01g40210OsAffx.23598.1.S1_x_at2/111+23019913..23020560hypothetical protein
LOC_Os01g40220OsAffx.23599.1.S1_at3/111+23022128..23022513hypothetical protein
LOC_Os01g40230Os.35344.18.S1_x_at10/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230Os.35344.3.S1_x_at9/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_at7/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40230OsAffx.22940.5.S1_x_at5/111+23025268..23031904transposon protein, putative, Mutator sub-class
LOC_Os01g40240NANA1+23032731..23034317F-box domain containing protein
LOC_Os01g40250OsAffx.23600.2.S1_at11/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_at10/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.23600.1.S1_x_at9/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40250OsAffx.7512.1.A1_at1/111+23036434..23054930HEAT repeat family protein, expressed
LOC_Os01g40260Os.30657.1.S1_at11/111+23058791..23060071WRKY DNA binding domain containing protein, expressed
LOC_Os01g40280Os.8965.1.S1_at11/111+23069393..23074031integral to membrane protein, putative, expressed
LOC_Os01g40290Os.31171.1.S1_at11/111+23074202..23074991expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23600.1.S1_x_at--414--5091Chr01:23053315..23053339 (25 bp)
GCACGATTTCCAGAGTTGTACTTCA
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--482--4991Chr01:23054445..23054469 (25 bp)
GCATGATTTCATCAGCGCTTGGTGC
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--540--1191Chr01:23054473..23054497 (25 bp)
AGTATCACTATCCTATGCTAACCTC
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--316--9651Chr01:23054547..23054571 (25 bp)
TCAGTGGTATGATCTCTGTCTTCAT
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--1132--3851Chr01:23054562..23054586 (25 bp)
CTGTCTTCATTATTCCAAACTGGGA
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--1073--8631Chr01:23054602..23054687 (25 bp)
TGGGATTCTTTATGATGTCAAGCAA
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--140--7251Chr01:23054700..23054724 (25 bp)
GTCCGCGACAAGTTGTGTGACCTGA
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--405--8931Chr01:23054717..23054741 (25 bp)
TGACCTGATTGGCACCGAGAAATTT
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--773--7111Chr01:23054801..23054825 (25 bp)
GTCAGAGAAGCTTATCGCGGCCGTG
LOC_Os01g40250
OsAffx.23600.1.S1_x_at--140--9731Chr01:23054956..23054980 (25 bp)
TCAATTTGTACAGCGCTCATTTCCG
NONE
OsAffx.23600.1.S1_x_at--1082--4111Chr01:23054979..23055003 (25 bp)
CGCACTGCAAGTTCTTCGCGTAGAA
NONE
Target Sequence 
GCACGATTTCCAGAGTTGTACTTCAAGCAAAATATGGAGATGAAGATTGTATTCAATTGCTTCAGCATGATTTCATCAGC
GCTTGGTGCTGAAGTATCACTATCCTATGCTAACCTCTTCTTGGGCCCCTTATATAAAGTTTGTGAAGGATTTGCTGGGA
AAGTCATCAGTGGTATGATCTCTGTCTTCATTATTCCAAACTGGGAAAGCTTCAAAATTGTTGGGATTCTTTATGATGTC
AAGCAATTAGCAGACAGTGTCCGCGACAAGTTGTGTGACCTGATTGGCACCGAGAAATTTGTAGAGGTTTACAACAGTGT
CAGGAAGGGCCTCAAACAGAAGAGGGAGAGCAGAAAGCAGTCAGAGAAGCTTATCGCGGCCGTGGACCCGGCGCGCCATG
CCAAGAGGAAGCTGCGCATCGCTGCCAAGCACCGGGAGCACAAGAGACGGAAGATAATGACCATGAAAATGGGGAGGTGG
TTGAGAATCAATTTGTACAGCGCTCATTTCCGCACTGCAAGTTCTTCGCGTAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23600.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis