Browse Element(s) Details


OsAffx.23625.1.S1_at

Description tigr:9629.m03993
TID=OsAffx.23625.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4174011/11hypothetical protein
LOC_Os02g419401/11RNase H domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g41710Os.7941.2.S1_s_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41710Os.7941.2.S1_a_at11/111+23934211..23935404Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g41720OsAffx.9161.2.S1_at11/111+23937907..23942105expressed protein
LOC_Os01g41720OsAffx.9161.1.S1_x_at8/111+23937907..23942105expressed protein
LOC_Os01g41720Os.46481.2.S1_x_at1/111+23937907..23942105expressed protein
LOC_Os01g41720Os.26986.1.A1_at1/111+23937907..23942105expressed protein
LOC_Os01g41730Os.37007.1.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41730Os.37007.2.S1_at11/111+23951137..23953867Protein kinase domain containing protein, expressed
LOC_Os01g41740OsAffx.23625.1.S1_at11/111+23957292..23958085hypothetical protein
LOC_Os01g41750Os.24878.1.A1_at11/111+23958615..23962223Leucine Rich Repeat family protein, expressed
LOC_Os01g41760NANA1+23964090..23964416hypothetical protein
LOC_Os01g41770OsAffx.21394.1.S1_at11/111+23966834..23969695Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.2.S1_x_at11/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41780Os.40423.1.S1_at10/111+23975277..23978326Leucine Rich Repeat family protein, expressed
LOC_Os01g41790OsAffx.21393.1.S1_at11/111+23982858..23985164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004518molecular_functionnuclease activity
GO:0004523molecular_functionribonuclease H activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23625.1.S1_at--845--6096Chr06:7969976..7970001 (25 bp)
GAGTCAGCTGCACGTCGGTCAAAAC
NONE
OsAffx.23625.1.S1_at--539--10311Chr01:23957558..23957579 (22 bp)
TTTCTGGACGTAAATGGGCCTCTCG
LOC_Os01g41740
OsAffx.23625.1.S1_at--233--5251Chr01:23957649..23957673 (25 bp)
GAATCTGCGAGTTCGGCCTTAGCAC
LOC_Os01g41740
OsAffx.23625.1.S1_at--989--1791Chr01:23957672..23957696 (25 bp)
ACCGCGGTCAGCAGAGCAGGCGATT
LOC_Os01g41740
OsAffx.23625.1.S1_at--413--9611Chr01:23957754..23957778 (25 bp)
TCAGGGATTCAGGAAGGCGCACCGC
LOC_Os01g41740
OsAffx.23625.1.S1_at--245--1971Chr01:23957781..23957805 (25 bp)
ACTGTTGCTTCATCTGCAGGGCCGG
LOC_Os01g41740
OsAffx.23625.1.S1_at--1020--1031Chr01:23957856..23957880 (25 bp)
AGGTGCTCGACCGTTTGCCTGACCG
LOC_Os01g41740
OsAffx.23625.1.S1_at--767--7551Chr01:23957881..23957905 (25 bp)
GGGCGCGGTGCATCAAATGAATCGA
LOC_Os01g41740
OsAffx.23625.1.S1_at--1105--5411Chr01:23957909..23957933 (25 bp)
GAAGCCGGGAACTCGACCAGATCAA
LOC_Os01g41740
OsAffx.23625.1.S1_at--370--3911Chr01:23957965..23957989 (25 bp)
CTGGAGCAATGTCTCAGTCTCACAG
LOC_Os01g41740
OsAffx.23625.1.S1_at--365--3811Chr01:23958004..23958028 (25 bp)
CTCCGATTCAGAGGTTGGTGTGGCC
LOC_Os01g41740
Target Sequence 
GAGTCAGCTGCACGTCGGTCAAAACTGGAGTTAAAACCGCTGAGGGATCTAGTTTGCACTGGTTTTCTGGACGTAAATGG
GCCTCTCGATGGCCCATCCACCTCGCCGCCGACGGGGCGCCATCAACTGCGCTGCCGCATCCAATCCCAGCACCCGCGAA
TCTGCGAGTTCGGCCTTAGCACCGCGGTCAGCAGAGCAGGCGATTGGTGGCGGCGCCGGCGGGACTCGCCGGGCCAGCGC
GTGCCACAGCCTGCCGACGAGGTCAGGGATTCAGGAAGGCGCACCGCGCACTGTTGCTTCATCTGCAGGGCCGGCGTTCT
TTCGGCGGGGGAGTGCCGGGTGGCGGTGGGCGTCGATCCCCTCGAGGTGCTCGACCGTTTGCCTGACCGGGGCGCGGTGC
ATCAAATGAATCGACGGGAAGCCGGGAACTCGACCAGATCAACAGTGCGAGCCCCCAAGCTGGTCAGTGGAGACTGGAGC
AATGTCTCAGTCTCACAGTTTCGGGGAGTCTCCTCCGATTCAGAGGTTGGTGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23625.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis