Browse Element(s) Details


OsAffx.23629.1.S1_s_at

Description gb:NM_192680.1
DB_XREF= gi:34912443
GEN=P0681B11.26
TID=OsAffx.23629.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0681B11.26 (P0681B11.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4205011/11zinc ribbon 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42010Os.25471.2.S1_x_at11/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_at10/111+24141670..24146121expressed protein
LOC_Os01g42010Os.25471.1.S1_x_at10/111+24141670..24146121expressed protein
LOC_Os01g42020OsAffx.380.1.S1_at3/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42020OsAffx.21975.1.S1_x_at1/111+24149934..24155232retrotransposon protein, putative, LINE subclass
LOC_Os01g42030Os.41335.2.S1_x_at11/111+24165857..24167611ATPase, AAA family protein, expressed
LOC_Os01g42050OsAffx.23629.1.S1_s_at11/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42050OsAffx.23629.2.S1_at8/111+24167701..24170395zinc ribbon 1, putative
LOC_Os01g42040Os.23694.1.S1_at11/111+24170122..24173706Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os01g42060Os.41333.1.A1_at11/111+24173889..24177174expressed protein
LOC_Os01g42070OsAffx.21384.2.S1_x_at11/111+24177717..24181332kinesin motor protein, putative, expressed
LOC_Os01g42080Os.47749.1.S1_at11/111+24182576..24188461expressed protein
LOC_Os01g42090Os.33697.1.S1_at11/111+24191529..24194053nodulin MtN3 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23629.1.S1_s_at--46--5131Chr01:24170305..24170329 (25 bp)
GCACAGCGGGAGCATGTCAGATCCT
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--337--5931Chr01:24170296..24170320 (25 bp)
GAGCATGTCAGATCCTTACCTGCCG
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--1131--8411Chr01:24170248..24170272 (25 bp)
GGCCACAACGGCAAGGGTCTTCCTC
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--715--11Chr01:24170194..24170218 (25 bp)
AGCTCCCGCGTCTCGTTTCGAAGGG
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--994--5091Chr01:24168078..24168102 (25 bp)
GCACTTTTGATCTAAATCTTCCAAG
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--992--5391Chr01:24168051..24168075 (25 bp)
GAAGCTTACTTGTTCAATTTACATG
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--856--1611Chr01:24168003..24168027 (25 bp)
AGCGGTTGATAAATAGGGTTGCCTA
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--709--231Chr01:24167793..24167989 (25 bp)
ATATTTCTTCAGTGTGCAGGGTGCC
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--908--7331Chr01:24167780..24167804 (25 bp)
GTGCAGGGTGCCAGGTGTACCACAA
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--428--4411Chr01:24167771..24167795 (25 bp)
GCCAGGTGTACCACAAATTTGTTGA
LOC_Os01g42050
OsAffx.23629.1.S1_s_at--784--3611Chr01:24167742..24167766 (25 bp)
CTTGGTCTAGTTGTTGAGTATGATC
LOC_Os01g42050
Target Sequence 
GCACAGCGGGAGCATGTCAGATCCTTACCTGCCGCATCAACGGCGACCAGCTCCGGCGGCCACAACGGCAAGGGTCTTCC
TCCTCCTCCTCGGTTGCGCCCGGCGATCGCGAGCTCCCGCGTCTCGTTTCGAAGGGGATTTTTGGAGGCGAGAGGCGGGA
AGAAGGAAGAGGGGAGAGGAGAAGCGAACCCTCCTCCCGGCGATGGCGACGACGGCTGCGGCGTACGGCTGCCCGGCGGC
GGCGGCGGCGGCGCCGTTCGCGGCCAGCGTCTCCCGCCGCCGCGCGCCCCTTTCCTGCGTCTCGCTCGCTTCCTCCTCCT
CCCGCAGGCGCACGGCGGAGTTTCCCGGGTTGAGGGTTTCGTGTCTCCGAGCACTTTTGATCTAAATCTTCCAAGAAGAA
GCTTACTTGTTCAATTTACATGCAATGCATGTGGAGAAAGGACCAAGCGGTTGATAAATAGGGTTGCCTATGAAAGAGGA
ACAATATTTCTTCAGTGTGCAGGGTGCCAGGTGTACCACAAATTTGTTGATAATCTTGGTCTAGTTGTTGAGTATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23629.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis