Browse Element(s) Details


OsAffx.23678.1.S1_at

Description tigr:9629.m04380
TID=OsAffx.23678.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g457907/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45760Os.4680.1.S1_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45760Os.4680.2.S1_x_at11/111+26321517..26323793flavin-containing monooxygenase family protein, putative, expressed
LOC_Os01g45770OsAffx.23676.1.S1_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770OsAffx.23676.1.S1_s_at11/111+26327296..26328079hypothetical protein
LOC_Os01g45770Os.45912.1.S1_at4/111+26327296..26328079hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_s_at11/111+26330325..26331020hypothetical protein
LOC_Os01g45780OsAffx.23677.1.S1_at10/111+26330325..26331020hypothetical protein
LOC_Os01g45790OsAffx.23678.1.S1_at7/111+26336500..26337432hypothetical protein
LOC_Os01g45800NANA1+26343687..26346910transposon protein, putative, unclassified, expressed
LOC_Os01g45810NANA1+26347545..26353700transposon protein, putative, unclassified
LOC_Os01g45820NANA1+26358133..26359155hypothetical protein
LOC_Os01g45830Os.33341.1.S1_at11/111+26360007..26361663Sulfate transporter, putative, expressed
LOC_Os01g45830Os.33341.2.S1_x_at6/111+26360007..26361663Sulfate transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23678.1.S1_at--737--2111Chr01:26336208..26336232 (25 bp)
ACAGGCATCGGCGACAAGTTTTGGC
NONE
OsAffx.23678.1.S1_at--465--8291Chr01:26336268..26336292 (25 bp)
GGCTATGGTTCGGTCAGACTGGTTA
NONE
OsAffx.23678.1.S1_at--6--11Chr01:26336283..26336307 (25 bp)
AGACTGGTTAATCTACTCCGGTTAG
NONE
OsAffx.23678.1.S1_at--255--7891Chr01:26336302..26336326 (25 bp)
GGTTAGACCGCAATTCATCGATTCA
NONE
OsAffx.23678.1.S1_at--265--8611Chr01:26336531..26336555 (25 bp)
TGTGCGTTGTTGTGGTGGAACCCCT
LOC_Os01g45790
OsAffx.23678.1.S1_at--311--7251Chr01:26336617..26336641 (25 bp)
GTCCCCGGCACTAATGGCATAGAAG
LOC_Os01g45790
OsAffx.23678.1.S1_at--1071--2051Chr01:26336667..26336691 (25 bp)
ACTTCCGCACCCCATGGATAAAAGG
LOC_Os01g45790
OsAffx.23678.1.S1_at--1149--6451Chr01:26336683..26336707 (25 bp)
GATAAAAGGCAGTCTCGGTTCTGGT
LOC_Os01g45790
OsAffx.23678.1.S1_at--1121--9731Chr01:26337330..26337350 (21 bp)
TAATAGATCGCTCGGTCTCGGTGAC
LOC_Os01g45790
OsAffx.23678.1.S1_at--546--10431Chr01:26337361..26337385 (25 bp)
TTAGAACCAAGAGACCAGCCTTTGT
LOC_Os01g45790
OsAffx.23678.1.S1_at--1147--3371Chr01:26337376..26337400 (25 bp)
CAGCCTTTGTCACCCTATGGATCTG
LOC_Os01g45790
Target Sequence 
ACAGGCATCGGCGACAAGTTTTGGCGGTTAGACCGGGAGATCAATACCGGTCAGACCGGCGGCTATGGTTCGGTCAGACT
GGTTAATCTACTCCGGTTAGACCGCAATTCATCGATTCAAGGCGTCATGGCGAGGAGAGAGCTCCTAGAAGTAGTTCTGT
GCGTTGTTGTGGTGGAACCCCTGGTCCTGTTGCCCCAAGAGGGAAAGCGAGAGCTAGAGCGAGGTGAGCGGGTCATCGTC
GACGTCCCCGGCACTAATGGCATAGAAGCCGCGAGGGCGTGGAACACCTGCGCACTTCCGCACCCCATGGATAAAAGGCA
GTCTCGGTTCTGGTNNGTTTTTTTAATAGATCGCTCGGTCTCGGTGACTCAAGAGAATTTAGAACCAAGAGACCAGCCTT
TGTCACCCTATGGATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23678.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis