Browse Element(s) Details


OsAffx.23686.1.S1_s_at

Description gb:NM_192391.1
DB_XREF= gi:34911865
GEN=OSJNBb0032K15.10
TID=OsAffx.23686.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) OSJNBb0032K15.10 (OSJNBb0032K15.10), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4636011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46330Os.14491.2.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46330Os.47463.1.S1_x_at4/111+26681581..26685281transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g46340Os.41519.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46340Os.50843.1.S1_at11/111+26691357..26696371expressed protein
LOC_Os01g46350Os.9524.1.S1_at11/111+26695246..26700949expressed protein
LOC_Os01g46350Os.9524.1.S2_at11/111+26695246..26700949expressed protein
LOC_Os01g46360OsAffx.23686.2.S1_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46360OsAffx.23686.1.S1_s_at11/111+26704259..26705009hypothetical protein
LOC_Os01g46370Os.41516.1.S1_at11/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.51595.1.S1_at10/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370OsAffx.23684.1.S1_x_at2/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46370Os.7172.1.S1_at1/111+26710443..26713872lipase class 3 family protein, putative, expressed
LOC_Os01g46380Os.4767.2.S1_x_at11/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46380Os.21537.1.S1_x_at3/111+26719024..26723138Ketol-acid reductoisomerase, chloroplast precursor, putative, expressed
LOC_Os01g46390OsAffx.21449.1.S1_at11/111+26725112..26725522hypothetical protein
LOC_Os01g46400Os.32478.1.S1_at11/111+26728417..26730344expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23686.1.S1_s_at--481--9191Chr01:26704294..26704318 (25 bp)
TGCCATAATCAATACGGTCCACGAA
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--551--4951Chr01:26704503..26704527 (25 bp)
GCATATGACAATGACTTCCCCAAGG
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--1145--3631Chr01:26704517..26704541 (25 bp)
CTTCCCCAAGGTTAGTACAGTGTGT
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--1082--7471Chr01:26704536..26704560 (25 bp)
GTGTGTGATAGGCTGATGCTCCAAA
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--429--6291Chr01:26704550..26704574 (25 bp)
GATGCTCCAAACTTATTTCGGTCTT
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--1146--10171Chr01:26704563..26704587 (25 bp)
TATTTCGGTCTTTCCAAGTCCTCTT
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--491--2031Chr01:26704611..26704632 (22 bp)
ACTTTTAGTTTCGTGGATCAGGGCA
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--1023--1071Chr01:26704738..26704762 (25 bp)
AGGGCACAGATACTCCACGTGTTGG
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--730--6151Chr01:26704762..26704786 (25 bp)
GAGGTTCAATTTATGGCGTCAGGCC
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--360--7091Chr01:26704779..26704803 (25 bp)
GTCAGGCCGTCGCAAAACTTTGGAT
LOC_Os01g46360
OsAffx.23686.1.S1_s_at--800--2331Chr01:26704850..26704874 (25 bp)
AAAGATGGACAACTCGAACGCCCCA
LOC_Os01g46360
Target Sequence 
TGCCATAATCAATACGGTCCACGAAGATACTCGTTACACGGGGAAAAGCACTGCATATGACAATGACTTCCCCAAGGTTA
GTACAGTGTGTGATAGGCTGATGCTCCAAACTTATTTCGGTCTTTCCAAGTCCTCTTCCGGAGGACCGAAAAAGGAGCAA
ACTTTTAGTTTCGTGGATCAGGGCACAGATACTCCACGTGTTGGAGGTTCAATTTATGGCGTCAGGCCGTCGCAAAACTT
TGGATCTTTATTTAGGGGGTACAAAGAAGGACAGGGCAGGATCCTAACTCGAAAGATGGACAACTCGAACGCCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23686.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis