Browse Element(s) Details


OsAffx.23695.1.S1_at

Description tigr:9629.m04506
TID=OsAffx.23695.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g470109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g46990OsAffx.11495.1.S1_at7/111+27155924..27157849hypothetical protein
LOC_Os01g46990OsAffx.21433.1.S1_at4/111+27155924..27157849hypothetical protein
LOC_Os01g46990Os.56448.1.S1_at1/111+27155924..27157849hypothetical protein
LOC_Os01g47000Os.35344.3.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000Os.35344.18.S1_x_at8/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47000OsAffx.22940.5.S1_x_at2/111+27163336..27169383transposon protein, putative, Mutator sub-class
LOC_Os01g47010OsAffx.820.1.S1_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.820.1.S1_x_at11/111+27172837..27173998hypothetical protein
LOC_Os01g47010OsAffx.23695.1.S1_at9/111+27172837..27173998hypothetical protein
LOC_Os01g47020NANA1+27177191..27180428transposon protein, putative, unclassified
LOC_Os01g47030NANA1+27181058..27187216transposon protein, putative, unclassified
LOC_Os01g47040Os.29878.1.S1_at11/111+27188929..27190282C2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23695.1.S1_at--873--8471Chr01:27173938..27173962 (25 bp)
TGGCGACAGAGCAAACAACGACAGT
LOC_Os01g47010
OsAffx.23695.1.S1_at--403--2591Chr01:27173922..27173946 (25 bp)
AACGACAGTGTCAGCTGGCGACGAA
LOC_Os01g47010
OsAffx.23695.1.S1_at--440--4711Chr01:27173909..27173933 (25 bp)
GCTGGCGACGAAGATCTTGGCAGTA
LOC_Os01g47010
OsAffx.23695.1.S1_at--967--4071Chr01:27173904..27173928 (25 bp)
CGACGAAGATCTTGGCAGTAGTGGC
LOC_Os01g47010
OsAffx.23695.1.S1_at--308--8011Chr01:27173879..27173903 (25 bp)
GGATGGCGATGGCAATCTCGACAAT
LOC_Os01g47010
OsAffx.23695.1.S1_at--1009--8211Chr01:27173869..27173893 (25 bp)
GGCAATCTCGACAATGCAGGCGCAA
LOC_Os01g47010
OsAffx.23695.1.S1_at--519--9511Chr01:27173864..27173888 (25 bp)
TCTCGACAATGCAGGCGCAACGGCT
LOC_Os01g47010
OsAffx.23695.1.S1_at--609--2051NONE
ACTTCAGCCGGCGAAATATTTGGGA
NONE
OsAffx.23695.1.S1_at--852--4471NONE
GCCGGCGAAATATTTGGGATACAAT
NONE
OsAffx.23695.1.S1_at--544--10171Chr01:27173070..27173094 (25 bp)
TATACCGTCGATTTTATACAACCGT
LOC_Os01g47010
OsAffx.23695.1.S1_at--724--7051Chr01:27173064..27173088 (25 bp)
GTCGATTTTATACAACCGTTGGACG
LOC_Os01g47010
Target Sequence 
TGGCGACAGAGCAAACAACGACAGTGTCAGCTGGCGACGAAGATCTTGGCAGTAGTGGCGGATGGCGATGGCAATCTCGA
CAATGCAGGCGCAACGGCTGGCGACGCTGCAACGACTTCAGCCGGCGAAATATTTGGGATACAATTTATTTTGAAAATAT
ACCGTCGATTTTATACAACCGTTGGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis