Browse Element(s) Details


OsAffx.23709.1.S1_at

Description tigr:9629.m04638
TID=OsAffx.23709.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4823011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48210Os.32281.2.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48210Os.32281.3.S1_x_at11/111+27951468..27957210PAP/25A associated domain containing protein, expressed
LOC_Os01g48220Os.6738.1.S1_at11/111+27957871..27960305expressed protein
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23709.1.S1_at--20--4011Chr01:27978540..27978564 (25 bp)
CGTGCGTCCTGCTGGTCTGTATGAC
LOC_Os01g48230
OsAffx.23709.1.S1_at--545--7251Chr01:27978535..27978559 (25 bp)
GTCCTGCTGGTCTGTATGACGACGT
LOC_Os01g48230
OsAffx.23709.1.S1_at--561--9131Chr01:27978531..27978555 (25 bp)
TGCTGGTCTGTATGACGACGTCGTC
LOC_Os01g48230
OsAffx.23709.1.S1_at--1056--7791Chr01:27978527..27978551 (25 bp)
GGTCTGTATGACGACGTCGTCCGTC
LOC_Os01g48230
OsAffx.23709.1.S1_at--358--4711Chr01:27978436..27978460 (25 bp)
GCGGCGCCGGTCGTGAACGTGGCTG
LOC_Os01g48230
OsAffx.23709.1.S1_at--978--4771Chr01:27978415..27978439 (25 bp)
GCTGCGGCCGCGGAGCCAATAATGC
LOC_Os01g48230
OsAffx.23709.1.S1_at--777--8411Chr01:27978410..27978434 (25 bp)
GGCCGCGGAGCCAATAATGCAGCAG
LOC_Os01g48230
OsAffx.23709.1.S1_at--555--8091Chr01:27978404..27978428 (25 bp)
GGAGCCAATAATGCAGCAGCCGGCC
LOC_Os01g48230
OsAffx.23709.1.S1_at--66--3091Chr01:27978398..27978422 (25 bp)
AATAATGCAGCAGCCGGCCCAGATG
LOC_Os01g48230
OsAffx.23709.1.S1_at--895--1671Chr01:27978387..27978411 (25 bp)
AGCCGGCCCAGATGGTGGCACCTGT
LOC_Os01g48230
OsAffx.23709.1.S1_at--297--8631Chr01:27978375..27978399 (25 bp)
TGGTGGCACCTGTGGTGGCAGACGG
LOC_Os01g48230
Target Sequence 
CGTGCGTCCTGCTGGTCTGTATGACGACGTCGTCCGTCGTCGACGCGGCGGCGGCTGCGCCTGCACGGCGGCTGCTGGGG
AGCGGGAGGGACGACGACGCCGTGGCGGCGCCGGTCGTGAACGTGGCTGCGGCCGCGGAGCCAATAATGCAGCAGCCGGC
CCAGATGGTGGCACCTGTGGTGGCAGACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis