Browse Element(s) Details


OsAffx.23710.1.S1_at

Description tigr:9629.m04641
TID=OsAffx.23710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4826011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g48230OsAffx.23709.1.S1_at11/111+27978302..27978607hypothetical protein
LOC_Os01g48250Os.41746.1.S1_at8/111+27983167..27984758F-box domain containing protein, expressed
LOC_Os01g48260OsAffx.23710.1.S1_at11/111+27985706..27985975hypothetical protein
LOC_Os01g48270Os.11627.1.S1_at11/111+27986863..27993594ATPase, AAA family protein, expressed
LOC_Os01g48280Os.14354.1.S1_at11/111+27995241..27998459Ubiquitin-conjugating enzyme E2 N, putative, expressed
LOC_Os01g48290OsAffx.23711.1.S1_x_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48290OsAffx.23711.1.S1_at11/111+28003349..28003876Dof domain, zinc finger family protein, expressed
LOC_Os01g48300Os.25062.1.A1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48300Os.25062.2.S1_a_at11/111+28004042..28008408expressed protein
LOC_Os01g48310OsAffx.11516.2.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310Os.20524.1.S1_at11/111+28008572..28012513expressed protein
LOC_Os01g48310OsAffx.11516.1.S1_x_at10/111+28008572..28012513expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23710.1.S1_at--1078--4711Chr01:27985841..27985865 (25 bp)
GCTGGGCAACGGGAGGGACGCCGCC
LOC_Os01g48260
OsAffx.23710.1.S1_at--625--1071Chr01:27985828..27985852 (25 bp)
AGGGACGCCGCCGTGACTGATCCGG
LOC_Os01g48260
OsAffx.23710.1.S1_at--867--4151Chr01:27985820..27985844 (25 bp)
CGCCGTGACTGATCCGGCCTTGGAG
LOC_Os01g48260
OsAffx.23710.1.S1_at--1013--9271Chr01:27985808..27985832 (25 bp)
TCCGGCCTTGGAGGCAATGATGCCG
LOC_Os01g48260
OsAffx.23710.1.S1_at--133--4331Chr01:27985803..27985827 (25 bp)
CCTTGGAGGCAATGATGCCGGCGCA
LOC_Os01g48260
OsAffx.23710.1.S1_at--1118--4591Chr01:27985746..27985770 (25 bp)
GCGACGTCGACGTCTCCGGGTCAAA
LOC_Os01g48260
OsAffx.23710.1.S1_at--81--5771Chr01:27985744..27985768 (25 bp)
GACGTCGACGTCTCCGGGTCAAAGA
LOC_Os01g48260
OsAffx.23710.1.S1_at--581--1891Chr01:27985743..27985767 (25 bp)
ACGTCGACGTCTCCGGGTCAAAGAG
LOC_Os01g48260
OsAffx.23710.1.S1_at--459--5751Chr01:27985738..27985762 (25 bp)
GACGTCTCCGGGTCAAAGAGGCTCA
LOC_Os01g48260
OsAffx.23710.1.S1_at--27--1911Chr01:27985737..27985761 (25 bp)
ACGTCTCCGGGTCAAAGAGGCTCAG
LOC_Os01g48260
OsAffx.23710.1.S1_at--823--4011Chr01:27985736..27985760 (25 bp)
CGTCTCCGGGTCAAAGAGGCTCAGC
LOC_Os01g48260
Target Sequence 
GCTGGGCAACGGGAGGGACGCCGCCGTGACTGATCCGGCCTTGGAGGCAATGATGCCGGCGCAGACGACGGTGGCACCGG
TGGTGGCGGACGGCGGCGACGTCGACGTCTCCGGGTCAAAGAGGCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23710.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis