Browse Element(s) Details


OsAffx.23738.1.S1_x_at

Description gb:NM_192217.1
DB_XREF= gi:34911517
GEN=P0047E11.22
TID=OsAffx.23738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative subtilisin-like protease (P0047E11.22), mRNA.
PROD=putative subtilisin-like protease
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5068011/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50630OsAffx.11549.1.S1_at11/111+29409886..29410506hypothetical protein
LOC_Os01g50630Os.31535.1.A1_at1/111+29409886..29410506hypothetical protein
LOC_Os01g50640NANA1+29411804..29417732retrotransposon protein, putative, unclassified
LOC_Os01g50650Os.28943.1.S1_x_at2/111+29418119..29421610retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.37083.2.S1_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50660Os.47130.4.A1_x_at1/111+29422547..29422873retrotransposon protein, putative, unclassified
LOC_Os01g50670OsAffx.21478.1.S1_at11/111+29427498..29428169transposon protein, putative, unclassified
LOC_Os01g50680OsAffx.23738.1.S1_x_at11/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50680OsAffx.17117.1.S1_x_at1/111+29431731..29435982PA domain containing protein, expressed
LOC_Os01g50690Os.50469.1.S1_x_at11/111+29436783..29446209expressed protein
LOC_Os01g50690Os.39477.1.S1_x_at9/111+29436783..29446209expressed protein
LOC_Os01g50700Os.3419.1.S1_a_at11/111+29446608..29451477Dehydrin family protein, expressed
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009733biological_processresponse to auxin stimulus
GO:0010102biological_processlateral root morphogenesis
GO:0005576cellular_componentextracellular region
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0004291molecular_functionsubtilisin activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23738.1.S1_x_at--839--1851Chr01:29435007..29435031 (25 bp)
ACGACAGCGGCAAGATCCGGGACGA
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--598--1911Chr01:29435073..29435097 (25 bp)
ACGTGAGGTCCGTGCAGGCGCTGGA
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--67--7571Chr01:29435101..29435125 (25 bp)
GGGCCTCGTGTACGACACCACGTCG
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--672--7291Chr01:29435300..29435324 (25 bp)
GTGCGGCGCCGGGTGAAGAACGTCG
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--539--4491Chr01:29435337..29435361 (25 bp)
GCCGGTACGCGGTCAGCGTCACCGA
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--1056--8991Chr01:29435376..29435400 (25 bp)
TGAAGGTCACGGTGTATCCGCCCGA
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--1162--4071Chr01:29435398..29435422 (25 bp)
CGAGCTCAGCTTCGAGTCCTACGGG
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--354--8551Chr01:29435448..29435472 (25 bp)
TGGAGGTGCAAGACGCCGCGGCGGC
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--209--4711Chr01:29435468..29435492 (25 bp)
GCGGCCGCCAACTACGTGTTCGGAA
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--1120--1891Chr01:29435481..29435505 (25 bp)
ACGTGTTCGGAAGCATCGAGTGGTC
LOC_Os01g50680
OsAffx.23738.1.S1_x_at--557--5811Chr01:29435522..29435546 (25 bp)
GACCCGGACCGGAAGCATCGCGTGC
LOC_Os01g50680
Target Sequence 
ACGACAGCGGCAAGATCCGGGACGAGACCGGCGCGGCCGCGACGCCGTTCGCCTACGGGTCGGGGCACGTGAGGTCCGTG
CAGGCGCTGGACCCGGGCCTCGTGTACGACACCACGTCGGCCGACTACGCCGACTTCCTCTGCGCCCTGAGGCCCACCCA
GAACCCTCTCCCGCTCCCGGTGTTCGGCGACGACGGCAAGCCGCGCGCGTGCAGCCAGGGCGCGCAGTACGGCCGCCCCG
AGGACCTCAACTACCCGTCCATCGCCGTGCCGTGCCTGTCCGGCTCCGCGACGGTGCGGCGCCGGGTGAAGAACGTCGGC
GCGGCGCCGTGCCGGTACGCGGTCAGCGTCACCGAGGCGCTGGCGGGGGTGAAGGTCACGGTGTATCCGCCCGAGCTCAG
CTTCGAGTCCTACGGGGAGGAGAGGGAGTTCACGGTGAGGCTGGAGGTGCAAGACGCCGCGGCGGCCGCCAACTACGTGT
TCGGAAGCATCGAGTGGTCGGAGGAGTCGGAGTCGGACCCGGACCGGAAGCATCGCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23738.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis