Browse Element(s) Details


OsAffx.23742.1.S1_at

Description tigr:9629.m04955
TID=OsAffx.23742.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY124849 At1g72740F28P22_7
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g511548/11Single myb histone 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51140Os.25546.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g51140Os.32078.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g51154Os.7810.1.S1_at11/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51154OsAffx.23742.1.S1_at8/111+29732470..29738221Single myb histone 4, putative, expressed
LOC_Os01g51170Os.15143.1.S1_at11/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51170Os.52395.1.S1_x_at1/111+29739043..29740801Glycylpeptide N-tetradecanoyltransferase 2, putative, expressed
LOC_Os01g51180Os.35344.18.S1_x_at10/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180Os.35344.3.S1_x_at8/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_at7/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51180OsAffx.22940.5.S1_x_at4/111+29743125..29750071transposon protein, putative, Mutator sub-class
LOC_Os01g51190Os.41901.1.S1_x_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.41901.1.S1_at11/111+29750433..29754868expressed protein
LOC_Os01g51190Os.20628.1.S1_at8/111+29750433..29754868expressed protein
LOC_Os01g51200Os.11642.1.S1_at11/111+29758507..29763300Casein kinase I, epsilon isoform, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23742.1.S1_at--140--531Chr01:29732708..29732732 (25 bp)
ATCGACCTCAAGGTACAGCCTCTGA
LOC_Os01g51154
OsAffx.23742.1.S1_at--1149--5831Chr01:29732711..29732735 (25 bp)
GACCTCAAGGTACAGCCTCTGACCT
LOC_Os01g51154
OsAffx.23742.1.S1_at--603--9731Chr01:29732715..29732739 (25 bp)
TCAAGGTACAGCCTCTGACCTTGCC
LOC_Os01g51154
OsAffx.23742.1.S1_at--405--7731NONE
GGTGGCTCGTGCGATGCTGCTACAA
NONE
OsAffx.23742.1.S1_at--197--8331NONE
GGCTCGTGCGATGCTGCTACAAGTT
NONE
OsAffx.23742.1.S1_at--426--3791NONE
CTCGTGCGATGCTGCTACAAGTTCA
NONE
OsAffx.23742.1.S1_at--188--4011Chr01:29733499..29733518 (20 bp)
CGTGCGATGCTGCTACAAGTTCAGA
LOC_Os01g51154
OsAffx.23742.1.S1_at--127--1351Chr01:29733519..29733543 (25 bp)
AGAGAAGAATTATGGTGCTGTTGTC
LOC_Os01g51154
OsAffx.23742.1.S1_at--1045--3131Chr01:29733526..29733550 (25 bp)
AATTATGGTGCTGTTGTCTGTGGGT
LOC_Os01g51154
OsAffx.23742.1.S1_at--468--10431Chr01:29733528..29733552 (25 bp)
TTATGGTGCTGTTGTCTGTGGGTAT
LOC_Os01g51154
OsAffx.23742.1.S1_at--919--8631Chr01:29733546..29733570 (25 bp)
TGGGTATGGTCATAGTGGATTGAAA
LOC_Os01g51154
Target Sequence 
ATCGACCTCAAGGTACAGCCTCTGACCTTGCCCCTGCGCCACCGCCGGCTCCCATGCGCCGGTGGCTCGTGCGATGCTGC
TACAAGTTCAGAAGAGAAGAATTATGGTGCTGTTGTCTGTGGGTATGGTCATAGTGGATTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23742.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis