Browse Element(s) Details


OsAffx.23790.1.S1_at

Description tigr:9629.m05336
TID=OsAffx.23790.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5471411/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g54670Os.32455.1.S1_at11/111+31780183..31784396expressed protein
LOC_Os01g54680Os.28943.1.S1_x_at1/111+31788870..31792095retrotransposon protein, putative, unclassified
LOC_Os01g54690NANA1+31793164..31798211retrotransposon protein, putative, unclassified
LOC_Os01g54700Os.51954.1.S1_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54700Os.32801.1.S1_x_at11/111+31800838..31804313transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g54714OsAffx.23790.1.S1_at11/111+31807618..31813573retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g54730Os.8190.2.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S1_at11/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.2.S1_x_at10/111+31813962..31817016expressed protein
LOC_Os01g54730Os.8190.1.S2_at9/111+31813962..31817016expressed protein
LOC_Os01g54740OsAffx.21756.3.S1_x_at5/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.2.S1_x_at2/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54740OsAffx.21756.4.S1_x_at1/111+31824522..31824929transposon protein, putative, unclassified
LOC_Os01g54750NANA1+31829375..31829821hypothetical protein
LOC_Os01g54760OsAffx.16036.1.S1_x_at1/111+31830829..31833054hypothetical protein
LOC_Os01g54770OsAffx.23792.1.S1_at11/111+31835490..31836885hypothetical protein
LOC_Os01g54784Os.26431.1.A1_a_at11/111+31838384..31846443expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23790.1.S1_at--1099--4931Chr01:31807651..31807675 (25 bp)
GCATTGCCTGCATCGGGTGACTGTG
LOC_Os01g54714
OsAffx.23790.1.S1_at--5--1311Chr01:31807791..31807815 (25 bp)
AGATGATGGCACCACCGGCGGAGTT
LOC_Os01g54714
OsAffx.23790.1.S1_at--391--4031Chr01:31808013..31808037 (25 bp)
CGTTGGCGCCGCACCGGACATGGTT
LOC_Os01g54714
OsAffx.23790.1.S1_at--585--1771Chr01:31808025..31808049 (25 bp)
ACCGGACATGGTTGCGCTGCGTGCA
LOC_Os01g54714
OsAffx.23790.1.S1_at--316--6691Chr01:31808035..31808059 (25 bp)
GTTGCGCTGCGTGCAAGTGCAACGT
LOC_Os01g54714
OsAffx.23790.1.S1_at--819--5011Chr01:31808467..31808491 (25 bp)
GCAGGAGCGGTATGTTTTTCTGCTC
LOC_Os01g54714
OsAffx.23790.1.S1_at--1090--6911Chr01:31808476..31808500 (25 bp)
GTATGTTTTTCTGCTCCGAGTATGA
LOC_Os01g54714
OsAffx.23790.1.S1_at--1092--10591Chr01:31808484..31808508 (25 bp)
TTCTGCTCCGAGTATGAAGCTTGCG
LOC_Os01g54714
OsAffx.23790.1.S1_at--643--1191Chr01:31808494..31808518 (25 bp)
AGTATGAAGCTTGCGAGTCTCTAAA
LOC_Os01g54714
OsAffx.23790.1.S1_at--497--6091Chr01:31808508..31808532 (25 bp)
GAGTCTCTAAAGTCAAGCCAAGGTA
LOC_Os01g54714
OsAffx.23790.1.S1_at--799--7831Chr01:31808529..31808553 (25 bp)
GGTAAGATTATTTTTCTTGGGCAAT
LOC_Os01g54714
Target Sequence 
GCATTGCCTGCATCGGGTGACTGTGGAGGCGGTGGTGAAGATGGGGGGCTGTTAGAGGGTGGCTGCGGCGGCGAGACGTT
GTTGCTCGGTGGTGGCGGCGAGGCCTTGGGCGCTGGCGGGCTTGGAACAAGTGGAGGAGGAGATGATGGCACCACCGGCG
GAGTTGGGGTTGGCGTCACCGGTGTAGGGGTTGGTGTCGGCTTTGGTGATGGTACTGGAGGTGGCGGAGGAAACACCGGT
GGAGGTGGTGGTGAGGTTACCGGGGGTGGCGGAGGAGGTGTCGCTGAAGGGACAGGAATCGGCGGAGGAGGAGGCGGCGG
CGACGGCGGCAACGGGGCAGGGGTCGGCTGCGGAGTAGGCTGCGTTGGCGCCGCACCGGACATGGTTGCGCTGCGTGCAA
GTGCAACGTGGTGCAGGAGCGGTATGTTTTTCTGCTCCGAGTATGAAGCTTGCGAGTCTCTAAAGTCAAGCCAAGGTAAG
ATTATTTTTCTTGGGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23790.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis