Browse Element(s) Details


OsAffx.23859.1.S1_at

Description tigr:9629.m05872
TID=OsAffx.23859.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 14 kda zinc-binding protein (protein kinase c inhibitor) (pkci) (fragment). (leaf mustard, indian mustard
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5975010/1114 kDa zinc-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59700OsAffx.11667.1.S1_at11/111+34863722..34864295hypothetical protein
LOC_Os01g59710OsAffx.21655.1.S1_at11/111+34872822..34874488hypothetical protein
LOC_Os01g59720OsAffx.11669.1.S1_at11/111+34874931..34876166hypothetical protein
LOC_Os01g59730Os.18206.1.S1_at11/111+34877208..3487948460S ribosomal protein L30, putative, expressed
LOC_Os01g59740Os.7103.1.S1_at11/111+34885058..34886784expressed protein
LOC_Os01g59750OsAffx.23859.1.S1_at10/111+34887517..3489115214 kDa zinc-binding protein, putative, expressed
LOC_Os01g59760Os.42200.1.S1_at10/111+34892143..34895139bZIP transcription factor family protein, expressed
LOC_Os01g59770NANA1+34896958..34897269hypothetical protein
LOC_Os01g59780OsAffx.21654.1.S1_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59780OsAffx.21654.1.S1_x_at11/111+34901681..34904452AP2 domain containing protein, expressed
LOC_Os01g59790Os.12144.1.S1_a_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59790Os.12144.2.S1_x_at11/111+34907190..34910479ADP-ribosylation factor, putative, expressed
LOC_Os01g59800Os.21368.1.A1_at11/111+34910742..34913959Vacuolar protein sorting 36 containing protein, expressed
LOC_Os01g59819Os.55138.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819OsAffx.20707.2.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.55476.1.S1_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed
LOC_Os01g59819Os.51558.1.S1_x_at1/111+34915857..34929208Glycosyl hydrolase family 1 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005080molecular_functionprotein kinase C binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23859.1.S1_at--865--1731Chr01:34889809..34889833 (25 bp)
ACCTATTTCTCTTCCTTGCAGTTTT
LOC_Os01g59750
OsAffx.23859.1.S1_at--1140--151Chr01:34889778..34889802 (25 bp)
ATTTTGCGGAAAGAGATCCCATCTC
LOC_Os01g59750
OsAffx.23859.1.S1_at--1157--1271Chr01:34889765..34889789 (25 bp)
AGATCCCATCTCAGGTGGTTTATGA
LOC_Os01g59750
OsAffx.23859.1.S1_at--405--6711Chr01:34889275..34889299 (25 bp)
GTTCGCATTTCAAAATAGAGGGCTC
LOC_Os01g59750
OsAffx.23859.1.S1_at--519--7511NONE
GTGGAGCAGTGCAGACCCTTGCATT
NONE
OsAffx.23859.1.S1_at--1035--5031Chr01:34888610..34888634 (25 bp)
GCAGACCCTTGCATTCAGAGACATA
LOC_Os01g59750
OsAffx.23859.1.S1_at--1086--111Chr01:34888598..34888622 (25 bp)
ATTCAGAGACATATCACCCCAAGCT
LOC_Os01g59750
OsAffx.23859.1.S1_at--847--1791Chr01:34888583..34888607 (25 bp)
ACCCCAAGCTCCAGTACATATTATA
LOC_Os01g59750
OsAffx.23859.1.S1_at--899--2331Chr01:34888543..34888567 (25 bp)
AAAGATGGATTGTCTAGGCTCTCAA
LOC_Os01g59750
OsAffx.23859.1.S1_at--760--6591Chr01:34888540..34888560 (21 bp)
GATTGTCTAGGCTCTCAAAGGCAGA
LOC_Os01g59750
OsAffx.23859.1.S1_at--363--5631Chr01:34887961..34887985 (25 bp)
GACACGTTGAGGTTATGGGCCATCT
LOC_Os01g59750
Target Sequence 
ACCTATTTCTCTTCCTTGCAGTTTTGACAAAATTTTGCGGAAAGAGATCCCATCTCAGGTGGTTTATGAGGATGAAAAGT
TCGCATTTCAAAATAGAGGGCTCAAAGGTGGAGCAGTGCAGACCCTTGCATTCAGAGACATATCACCCCAAGCTCCAGTA
CATATTATAATAATTCCCAAGGTTAAAGATGGATTGTCTAGGCTCTCAAAGGCAGAAGAAAGACACGTTGAGGTTATGGG
CCATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23859.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis