Browse Element(s) Details


OsAffx.23889.1.S1_s_at

Description tigr:9629.m06131
TID=OsAffx.23889.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Clathrin adaptor complex small chain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6215010/11Clathrin adaptor complex small chain family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62120NANA1+36291156..36291593hypothetical protein
LOC_Os01g62130Os.28023.1.S1_at11/111+36293007..36293783Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23889.1.S1_s_at--520--10171Chr01:36308599..36308623 (25 bp)
TATACTGCAAATCCGCTTCCCCGAG
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--799--10651NONE
TTCCCCGAGATGGAATCCTGTCCTT
NONE
OsAffx.23889.1.S1_s_at--660--2511Chr01:36308901..36308925 (25 bp)
AACATTCTTGTGCTGGATTCCGAAG
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--930--2831Chr01:36308943..36308967 (25 bp)
AAGTACTACAGCGATGACTGGCCCT
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--452--2691Chr01:36308983..36309007 (25 bp)
AAGCTTTCGAGAAGTCGGTCTTTGC
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--7--5251Chr01:36308993..36309017 (25 bp)
GAAGTCGGTCTTTGCTAAAACCCAG
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--865--9811Chr01:36309008..36309032 (25 bp)
TAAAACCCAGAAAACGAGCGCTAGA
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--301--2991Chr01:36309693..36309717 (25 bp)
AATGTTTGACAGTTACTTCGTTGTA
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--1060--6731Chr01:36309723..36309747 (25 bp)
GTTCATCCAAGATCTACACTTTTTT
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--746--10331Chr01:36309780..36309804 (25 bp)
TTTAGCATCTGTTCTTCAGGGCTTC
LOC_Os01g62150
OsAffx.23889.1.S1_s_at--1035--431Chr01:36309973..36309997 (25 bp)
ATCTTATCTTCTTATGCCTTGACGA
LOC_Os01g62150
Target Sequence 
TATACTGCAAATCCGCTTCCCCGAGATGGAATCCTGTCCTTCGGTGAAGAACATTCTTGTGCTGGATTCCGAAGGGAAGC
GCGTGGCGGTGAAGTACTACAGCGATGACTGGCCCTCTTTGTCCTCGAAGCAAGCTTTCGAGAAGTCGGTCTTTGCTAAA
ACCCAGAAAACGAGCGCTAGAACAGAAGCTGAGATAGTAATGTTTGACAGTTACTTCGTTGTATACAAGTTCATCCAAGA
TCTACACTTTTTTGTAACTGGAGGTGATGAAGAGAATGAGCTCATTTTAGCATCTGTTCTTCAGGGCTTCTCTGAAGCTA
TTGATTACCTTCTCAGAAACAAAGTGCACAGAAGGGCTGCGCTTGAAAACTTGGATCTTATCTTCTTATGCCTTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23889.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis