Browse Element(s) Details


OsAffx.23890.4.S1_x_at

Description tigr:9629.m06133
TID=OsAffx.23890.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6217010/11hypothetical protein
LOC_Os03g396025/11hypothetical protein
LOC_Os08g388603/11hypothetical protein
LOC_Os02g456401/11hypothetical protein
LOC_Os05g401101/11retrotransposon protein, putative, unclassified
LOC_Os04g425901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein
LOC_Os01g62150Os.24942.1.S1_at11/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62150OsAffx.23889.1.S1_s_at10/111+36308451..36311043Clathrin adaptor complex small chain family protein, expressed
LOC_Os01g62160Os.33927.1.S1_at11/111+36311107..36314405expressed protein
LOC_Os01g62170OsAffx.21761.1.S1_x_at11/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.4.S1_x_at10/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.21761.1.S1_at9/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_x_at6/111+36320830..36322782hypothetical protein
LOC_Os01g62170OsAffx.23890.2.S1_at5/111+36320830..36322782hypothetical protein
LOC_Os01g62180NANA1+36322908..36323828hypothetical protein
LOC_Os01g62190Os.10411.1.S1_at11/111+36328091..36328950Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62200Os.38316.1.S1_at11/111+36329408..36331950expressed protein
LOC_Os01g62200Os.38316.1.S1_s_at10/111+36329408..36331950expressed protein
LOC_Os01g62200Os.27407.1.A1_at6/111+36329408..36331950expressed protein
LOC_Os01g62210Os.47966.1.S1_at10/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62210OsAffx.21760.1.S1_at1/111+36334251..36336745ribosomal protein L17 containing protein, expressed
LOC_Os01g62220OsAffx.11696.1.S1_at11/111+36338499..36339869pentatricopeptide, putative
LOC_Os01g62230Os.19784.1.S1_at10/111+36340890..36341546Histone H2B, putative, expressed
LOC_Os01g62244Os.12603.1.S1_at11/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.51168.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed
LOC_Os01g62244Os.52300.1.S1_at1/111+36344054..36350317Ubiquitin-conjugating enzyme E2 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23890.4.S1_x_at--1113--2371Chr01:36320847..36320871 (25 bp)
AAACGGCTCAGAAAGATCGGATGGT
LOC_Os01g62170
OsAffx.23890.4.S1_x_at--876--811NONE
ATGGTGACAGGAAGCAGGAACTCGA
NONE
OsAffx.23890.4.S1_x_at--309--852Chr03:21950727..21950750 (24 bp)
ATGGCAACACCGTTACCGTGCATGG
LOC_Os03g39602
OsAffx.23890.4.S1_x_at--3--5035Chr07:5518882..5518914 (25 bp)
GCAGGGAGGAAGCATCTCTTCGATA
NONE
OsAffx.23890.4.S1_x_at--741--8014Chr07:5518886..5518918 (25 bp)
GGAGGAAGCATCTCTTCGATACAGC
NONE
OsAffx.23890.4.S1_x_at--561--7294Chr03:21951071..21951095 (25 bp)
GTGCGCTTGCACTAACTCGTGGCCG
LOC_Os03g39602
OsAffx.23890.4.S1_x_at--58--5811Chr01:36322678..36322702 (25 bp)
GACGCTGCCGGTCGCTGGGCTGCGG
LOC_Os01g62170
OsAffx.23890.4.S1_x_at--787--8554Chr07:5519044..5519067 (24 bp)
TGGAGTCGCGTCGTCGGTAACCGCT
NONE
OsAffx.23890.4.S1_x_at--229--6091Chr01:36322712..36322736 (25 bp)
GAGTCGCGTCGTCGGTAACCGCTGG
LOC_Os01g62170
OsAffx.23890.4.S1_x_at--277--4651Chr01:36322717..36322741 (25 bp)
GCGTCGTCGGTAACCGCTGGCGGGC
LOC_Os01g62170
OsAffx.23890.4.S1_x_at--950--9431Chr01:36322723..36322747 (25 bp)
TCGGTAACCGCTGGCGGGCGCGGGC
LOC_Os01g62170
Target Sequence 
AAACGGCTCAGAAAGATCGGATGGTGACAGGAAGCAGGAACTCGAGAACTTGGAGGTTGTCACGGCGGACGACGGCGGCA
GTGGCGATGGCAACACCGTTACCGTGCATGGCGACAAGGCTCCCGTTGATGGCAAAGGAGAGGCAGCGACTCCGGCGAAA
CGCGCCGACGTATCAGGTGGCCAAGAATGCGGCGTGGTCCGCGTGGAGGATGTACAGCGGGTGGAGACGCCAGCTGCAGA
GATCACGAATGCCATGAAGGACACGGAGATCGTGAAGAATAAGGACCAGGAGAGAGGAGGCAGCGAGAGGGAAGAAGAGG
AGACTGTTGCCATGGCCGGCACGGGGAGCAGGGAGGAAGCATCTCTTCGATACAGCATGGAAATAGGGGAACCTCCTTAC
CGGCGGGAGCGGCGGGACGGCGGGTGCGCTTGCACTAACTCGTGGCCGCGGCGGGTCAGGAAGGCAGGCGACGCTGCCGG
TCGCTGGGCTGCGGCGGCGGATGGAGTCGCGTCGTCGGTAACCGCTGGCGGGCGCGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23890.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis