Browse Element(s) Details


OsAffx.23898.1.S1_at

Description tigr:9629.m06231
TID=OsAffx.23898.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6302011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62960OsAffx.27770.1.S1_x_at4/111+36804898..36805519hypothetical protein
LOC_Os01g62970Os.20863.1.S1_at11/111+36807359..36810839expressed protein
LOC_Os01g62970Os.20863.2.S1_x_at8/111+36807359..36810839expressed protein
LOC_Os01g62980Os.51480.1.S1_x_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62980Os.51480.1.S1_at11/111+36810869..36811667protease inhibitor/seed storage/lipid transfer protein, putative, expressed
LOC_Os01g62990OsAffx.23897.1.S1_at11/111+36812434..36816566pollen-specific kinase partner protein, putative, expressed
LOC_Os01g63000Os.28824.1.S1_at3/111+36822985..36823191expressed protein
LOC_Os01g63010Os.16018.1.S1_at11/111+36823635..36825014ENOD18 protein, putative, expressed
LOC_Os01g63020OsAffx.23898.1.S1_at11/111+36826948..36830514hypothetical protein
LOC_Os01g63030Os.45774.1.S1_at9/111+36839516..36843462transposon protein, putative, unclassified
LOC_Os01g63040OsAffx.31018.3.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040OsAffx.31018.2.S1_x_at11/111+36844189..36848735hypothetical protein
LOC_Os01g63040Os.50578.1.S1_x_at7/111+36844189..36848735hypothetical protein
LOC_Os01g63050Os.25308.1.A1_at6/111+36854891..36856690expressed protein
LOC_Os01g63050OsAffx.28148.1.S1_x_at2/111+36854891..36856690expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23898.1.S1_at--667--251Chr01:36827571..36827595 (25 bp)
ATATCGACCTATGTGGGCTTCTCTG
LOC_Os01g63020
OsAffx.23898.1.S1_at--653--3111Chr01:36827611..36827635 (25 bp)
AATATCAGGCTTCTGTACCGGGCAG
LOC_Os01g63020
OsAffx.23898.1.S1_at--1132--9951Chr01:36827626..36827650 (25 bp)
TACCGGGCAGATCGAGTTATGGCTC
LOC_Os01g63020
OsAffx.23898.1.S1_at--408--891Chr01:36828625..36828649 (25 bp)
AGGCGCCTCGCCAAGTGTAACAAGA
LOC_Os01g63020
OsAffx.23898.1.S1_at--571--411Chr01:36830148..36830167 (20 bp)
ATCATCAGTGCCTTCTCGAAGTGCA
LOC_Os01g63020
OsAffx.23898.1.S1_at--624--8891Chr01:36830193..36830217 (25 bp)
TGAGATGACCGCATACTTCCAACAT
LOC_Os01g63020
OsAffx.23898.1.S1_at--62--7931Chr01:36830240..36830264 (25 bp)
GGATTGGTTATCGTTTCGCGGTCTC
LOC_Os01g63020
OsAffx.23898.1.S1_at--142--3751Chr01:36830262..36830286 (25 bp)
CTCTTCTGGTCGATTTGGTGGGTTA
LOC_Os01g63020
OsAffx.23898.1.S1_at--120--10071Chr01:36830322..36830346 (25 bp)
TAGTGGTTTCCGTAAGCAGCTCGAC
LOC_Os01g63020
OsAffx.23898.1.S1_at--728--10591Chr01:36830347..36830371 (25 bp)
TTGACAACAAATTTCGCCACCCAAT
LOC_Os01g63020
OsAffx.23898.1.S1_at--698--3091Chr01:36830376..36830400 (25 bp)
AATAGAGCGTACAGTCTCTGCCGGT
LOC_Os01g63020
Target Sequence 
ATATCGACCTATGTGGGCTTCTCTGCTTTTCGGCCCCAAAAATATCAGGCTTCTGTACCGGGCAGATCGAGTTATGGCTC
TGGCAATAGGAATCAGACGAGGTCACAGGTACAGGCGCCTCGCCAAGTGTAACAAGAGACACGCCCCGTTCTTGTCTCGT
ACCGACTCTGCTTCGGACGGCCGTTCACCAGTTCTGCTCCTGCATCCTTTTGCCATCATCAGTGCCTTCTCGAAGTGCAG
AGGAATTATTAAAGCACCTGAAGATGAGATGACCGCATACTTCCAACATGGTTTGGTTCACGCGAAACGTTGGATTGGTT
ATCGTTTCGCGGTCTCTTCTGGTCGATTTGGTGGGTTAGCGGGTGATTGTGGAACAAGTCGGGTGCAGGGTGCTAGTGGT
TTCCGTAAGCAGCTCGACTTGACAACAAATTTCGCCACCCAATCCGTAATAGAGCGTACAGTCTCTGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis