Browse Element(s) Details


OsAffx.23953.1.S1_at

Description tigr:9629.m06681
TID=OsAffx.23953.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g672708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67250Os.27893.2.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S2_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.1.S1_at11/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67250Os.27893.3.S1_x_at10/111+39352139..39361899N terminus of Rad21/Rec8 like protein, expressed
LOC_Os01g67260OsAffx.23952.1.S1_at11/111+39367480..39368971hypothetical protein
LOC_Os01g67270OsAffx.23953.1.S1_at8/111+39373991..39374761expressed protein
LOC_Os01g67280OsAffx.11769.1.S1_s_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67280OsAffx.11769.2.S1_at11/111+39376689..39378379hypothetical protein
LOC_Os01g67290Os.10859.1.S1_a_at11/111+39379134..39385378cyclin, putative, expressed
LOC_Os01g67300OsAffx.23954.1.S1_at11/111+39390294..39392106expressed protein
LOC_Os01g67300Os.16281.1.A1_s_at3/111+39390294..39392106expressed protein
LOC_Os01g67310Os.15943.1.S1_at11/111+39393026..39395480Patatin-like phospholipase family protein, expressed
LOC_Os01g67314Os.36852.1.S1_at11/111+39396981..39399517expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23953.1.S1_at--523--9311Chr01:39373370..39373394 (25 bp)
TCCCGTGGCATTGATTATCCCGTGG
NONE
OsAffx.23953.1.S1_at--381--1931Chr01:39373395..39373419 (25 bp)
ACGGTCAGATAGTGCTCGACGTGCA
NONE
OsAffx.23953.1.S1_at--52--5771Chr01:39373412..39373844 (25 bp)
GACGTGCACGCGATCGATCTCACAT
NONE
OsAffx.23953.1.S1_at--805--2371Chr01:39374142..39374166 (25 bp)
AAACGCGAGCCAACGACCGGCGTTG
LOC_Os01g67270
OsAffx.23953.1.S1_at--1092--4031Chr01:39374162..39374186 (25 bp)
CGTTGCTTCTCGGTCAAGGCTGGCT
LOC_Os01g67270
OsAffx.23953.1.S1_at--393--871Chr01:39374597..39374621 (25 bp)
ATGGCGAGCTTAATACTGGTGTCTT
LOC_Os01g67270
OsAffx.23953.1.S1_at--858--9911Chr01:39374610..39374634 (25 bp)
TACTGGTGTCTTTTAGTCTGATGGG
LOC_Os01g67270
OsAffx.23953.1.S1_at--872--7171Chr01:39374625..39374649 (25 bp)
GTCTGATGGGTGATAGTTCCTACTC
LOC_Os01g67270
OsAffx.23953.1.S1_at--571--8831Chr01:39374635..39374659 (25 bp)
TGATAGTTCCTACTCACTGGCGCTT
LOC_Os01g67270
OsAffx.23953.1.S1_at--103--8471Chr01:39374652..39374676 (25 bp)
TGGCGCTTCGAATAATCATCTCTCT
LOC_Os01g67270
OsAffx.23953.1.S1_at--707--1531Chr01:39374686..39374710 (25 bp)
AGCATTTGCTTTCTTTCTAACCCAA
LOC_Os01g67270
Target Sequence 
TCCCGTGGCATTGATTATCCCGTGGACGGTCAGATAGTGCTCGACGTGCACGCGATCGATCTCACATCGCTCACGTACGC
ACGCGCCGCGCCGCGCCGCGCCGCGTTCATCGTCGTCGTCGTCGTCAACGACGACCAGACCGACCGGCGCCGTCCGGCCA
TCCGCCGCAGCGCGCGCCGCTCAACGGCGCCCCTTCCCGGCCGGCGGCCAACCATGCCCGTTCTGATGCTCCCCCGGCAA
TACGATGCCGCCGCCGCTCCTCGACGGACGACGGTGACGATCGACGACAGCGAGGCGGCGCTGCTCGAGAGACTCCTCCG
CCGGATGGAAGAAGGCGACGACGCCGCCGCCGCCGGCGGCGACCAAACGCGAGCCAACGACCGGCGTTGCTTCTCGGTCA
AGGCTGGCTGCCGCTTCGTCCGGGNNNNTNNNGCTATGGCGAGCTTAATACTGGTGTCTTTTAGTCTGATGGGTGATAGT
TCCTACTCACTGGCGCTTCGAATAATCATCTCTCTTTCTCCCGCAGCATTTGCTTTCTTTCTAACCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis