Browse Element(s) Details


OsAffx.23965.1.S1_at

Description tigr:9629.m06758
TID=OsAffx.23965.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6808011/11Harpin-induced protein 1 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68050Os.8422.1.S1_at11/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68050Os.47836.1.A1_at4/111+39889590..39892515Transmembrane amino acid transporter protein, expressed
LOC_Os01g68060Os.11396.1.S1_at11/111+39892600..39896895Copine family protein, expressed
LOC_Os01g68070Os.52250.1.A1_at11/111+39903897..39907035salt-inducible protein, putative, expressed
LOC_Os01g68080OsAffx.23965.1.S1_at11/111+39907344..39908254Harpin-induced protein 1 containing protein
LOC_Os01g68090OsAffx.11785.1.S1_at11/111+39909204..39910571Harpin-induced protein 1 containing protein
LOC_Os01g68104OsAffx.2432.1.S1_at11/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104Os.19434.1.S1_at9/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.3.S1_at7/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.2.S1_x_at2/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68104OsAffx.28308.1.S1_at1/111+39913524..39918095Zinc finger, C2H2 type family protein, expressed
LOC_Os01g68120Os.49417.1.S1_at11/111+39919469..39932566RNase3 domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23965.1.S1_at--1044--7251Chr01:39908174..39908198 (25 bp)
GTCCTATGTGCCTTTGTGGCAGAGA
LOC_Os01g68080
OsAffx.23965.1.S1_at--834--5371Chr01:39908129..39908153 (25 bp)
GAAGAAGAAGCAGCGTCACGCCGCG
LOC_Os01g68080
OsAffx.23965.1.S1_at--432--3271Chr01:39907677..39907701 (25 bp)
CAACACCAAGATCGGCATCGTGCTG
LOC_Os01g68080
OsAffx.23965.1.S1_at--1056--2791Chr01:39907670..39907694 (25 bp)
AAGATCGGCATCGTGCTGCGCTACG
LOC_Os01g68080
OsAffx.23965.1.S1_at--38--1911Chr01:39907648..39907672 (25 bp)
ACGTGCGGTTCGACCTCTACTTCGA
LOC_Os01g68080
OsAffx.23965.1.S1_at--515--9531Chr01:39907633..39907657 (25 bp)
TCTACTTCGAGGACAGCGTGGTCGC
LOC_Os01g68080
OsAffx.23965.1.S1_at--364--1771Chr01:39907543..39907567 (25 bp)
ACCTGGTGGTCAGCAGTGTGTCCGT
LOC_Os01g68080
OsAffx.23965.1.S1_at--148--7911Chr01:39907441..39907465 (25 bp)
GGTTCCGCACGCAGCTCAACTTCGA
LOC_Os01g68080
OsAffx.23965.1.S1_at--1145--1551Chr01:39907429..39907453 (25 bp)
AGCTCAACTTCGACCGGTGGTTCTT
LOC_Os01g68080
OsAffx.23965.1.S1_at--751--7891Chr01:39907411..39907435 (25 bp)
GGTTCTTCAGGTACAGATACTGGGT
LOC_Os01g68080
OsAffx.23965.1.S1_at--423--1271Chr01:39907397..39907421 (25 bp)
AGATACTGGGTCAAGCCGCAGTGCA
LOC_Os01g68080
Target Sequence 
GTCCTATGTGCCTTTGTGGCAGAGAAGGGTGGAGGAGGAGGAGGAGAAGAAGAAGCAGCGTCACGCCGCGGCGCCACCGC
GCGCAGCCGCGCCGGAAGAACAGCAGCAGGCAGAGAAGACGCCGCGGCGCACATCGACAAAGCGCGGCGACAGCGCGCGG
CGGGCGATCAGCGCCAACCTCACCGTCCTCGCCGCCATCTCCAACCCCAACACCAAGATCGGCATCGTGCTGCGCTACGT
GCGGTTCGACCTCTACTTCGAGGACAGCGTGGTCGCCGCGCAGGCGGTGTGGCCGGCGCCAGTGCAGGTGGCGCCCGGCG
GCAGCGTGCCCCGGAGAGTGCACCTGGTGGTCAGCAGTGTGTCCGTGACGCGGCAGGACGCGGCCTTGTGGCGGAACGCG
ACGGCCAAGGGCGGCAGGCCGGTGGCGCTGCGGCTCGCCGGCCGGTTCCGCACGCAGCTCAACTTCGACCGGTGGTTCTT
CAGGTACAGATACTGGGTCAAGCCGCAGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis