Browse Element(s) Details


OsAffx.23977.1.S1_x_at

Description tigr:9629.m06846
TID=OsAffx.23977.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P21-Rho-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6889011/11P21-Rho-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68860Os.19086.1.S1_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.1.S1_a_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.2.S1_x_at11/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68860Os.19086.3.S1_x_at7/111+40332916..40337773Zinc finger CCCH type domain containing protein ZFN-like 2, putative, expressed
LOC_Os01g68870Os.23868.1.S1_at11/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870Os.56430.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68870OsAffx.11967.1.S1_x_at1/111+40343452..40350702Leucine Rich Repeat family protein, expressed
LOC_Os01g68880NANA1+40355323..40355577hypothetical protein
LOC_Os01g68890OsAffx.23977.1.S1_x_at11/111+40356970..40358278P21-Rho-binding domain containing protein, expressed
LOC_Os01g68900Os.6609.1.S1_at11/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68900OsAffx.12779.1.A1_x_at1/111+40362890..40364322Zinc finger, C3HC4 type family protein, expressed
LOC_Os01g68920NANA1+40369722..40371101retrotransposon protein, putative, unclassified
LOC_Os01g68930Os.55775.1.S1_at11/111+40382923..40386295expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009860biological_processpollen tube growth
GO:0010215biological_processcellulose microfibril organization
GO:0030833biological_processregulation of actin filament polymerization
GO:0005737cellular_componentcytoplasm
GO:0005886cellular_componentplasma membrane
GO:0016324cellular_componentapical plasma membrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23977.1.S1_x_at--853--4691Chr01:40357502..40357526 (25 bp)
GCGGCGCGGCGGAGAACAAGCCCAA
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--155--8371Chr01:40357463..40357487 (25 bp)
TGGCGAGGCTTCTCCGGGGGTTCAA
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--934--7671Chr01:40357446..40357470 (25 bp)
GGGTTCAAGAACCTGTCCCAGATCT
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--1118--6751Chr01:40357444..40357468 (25 bp)
GTTCAAGAACCTGTCCCAGATCTTC
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--792--2731Chr01:40357440..40357464 (25 bp)
AAGAACCTGTCCCAGATCTTCGCCG
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--165--1431Chr01:40357439..40357463 (25 bp)
AGAACCTGTCCCAGATCTTCGCCGT
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--703--1751Chr01:40357436..40357460 (25 bp)
ACCTGTCCCAGATCTTCGCCGTGTA
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--1060--7231Chr01:40357432..40357456 (25 bp)
GTCCCAGATCTTCGCCGTGTACGAG
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--110--7651Chr01:40357376..40357400 (25 bp)
GGGAGATGGTGATCGGCCTCCCCAC
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--53--1791Chr01:40357353..40357377 (25 bp)
ACCGACGTAAAGCACGTGGCGCACA
LOC_Os01g68890
OsAffx.23977.1.S1_x_at--863--8371Chr01:40357174..40357198 (25 bp)
GGCGTTCTCCATGCGGCAGTTCGAG
LOC_Os01g68890
Target Sequence 
GCGGCGCGGCGGAGAACAAGCCCAAGGGGGAGTCGCTGGTGGCGAGGCTTCTCCGGGGGTTCAAGAACCTGTCCCAGATC
TTCGCCGTGTACGAGGACGACGGCGAGGAGGAGGAGGAGGAGGAGCGGGAGATGGTGATCGGCCTCCCCACCGACGTAAA
GCACGTGGCGCACATCGGCTGGGACGGCAGCACCAACACCACCACCAGCCTCCGCTCCTGGAACCGCGCCGCGCCGCCGT
CCTCCTCCGCCTCCGCCGCGTCCACCTCGTCGGCCTTGCCGGCGCCGGCGCCGCCGCCGCCGCCGTCCCAGCAGCAGCCG
CCGCTGCCGGCGTTCTCCATGCGGCAGTTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23977.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis