Browse Element(s) Details


OsAffx.23987.1.S1_at

Description tigr:9629.m06944
TID=OsAffx.23987.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7028011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70260Os.33220.1.S1_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.2.S1_x_at11/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70260Os.33220.3.S1_x_at9/111+41006428..41010752Protein kinase domain containing protein, expressed
LOC_Os01g70270Os.11696.1.S1_a_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.1.S1_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70270Os.11696.2.S1_x_at11/111+41022513..41027770Auxin response factor 2, putative, expressed
LOC_Os01g70280OsAffx.23987.1.S1_at11/111+41031643..41032571hypothetical protein
LOC_Os01g70280OsAffx.4205.1.S1_x_at1/111+41031643..41032571hypothetical protein
LOC_Os01g70290OsAffx.9650.1.S1_at11/111+41033824..41034972hypothetical protein
LOC_Os01g70300Os.3448.1.S1_a_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70300Os.3448.2.S1_x_at11/111+41035489..41039809aspartate kinase family protein, expressed
LOC_Os01g70310Os.13595.2.S1_x_at11/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70310Os.13595.1.S1_at10/111+41041065..41044028inducer of CBF expression 1 protein, putative, expressed
LOC_Os01g70320Os.5280.1.S1_at10/111+41050234..41057356expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23987.1.S1_at--859--9391Chr01:41031988..41032012 (25 bp)
TCGTTCCCAGCACCAATGTTGATGA
LOC_Os01g70280
OsAffx.23987.1.S1_at--682--6291Chr01:41032014..41032038 (25 bp)
GATGATGGTGATGGCACCCTCTTCA
LOC_Os01g70280
OsAffx.23987.1.S1_at--434--11Chr01:41032051..41032075 (25 bp)
TCGTTAAACCGGAGTCGCCGAGAAG
LOC_Os01g70280
OsAffx.23987.1.S1_at--342--5971Chr01:41032070..41032094 (25 bp)
GAGAAGTTCACCGTCGCACAGCGAT
LOC_Os01g70280
OsAffx.23987.1.S1_at--1032--1631Chr01:41032089..41032113 (25 bp)
AGCGATCAGTTCGAGGCTGTTTTCT
LOC_Os01g70280
OsAffx.23987.1.S1_at--323--911Chr01:41032102..41032126 (25 bp)
AGGCTGTTTTCTACCGAACGCAGAG
LOC_Os01g70280
OsAffx.23987.1.S1_at--221--5451Chr01:41032117..41032141 (25 bp)
GAACGCAGAGCTCTGTCCGCAGTGT
LOC_Os01g70280
OsAffx.23987.1.S1_at--842--3331Chr01:41032211..41032235 (25 bp)
CACGATCAACTCGTACGCGGTGGTC
LOC_Os01g70280
OsAffx.23987.1.S1_at--537--6411Chr01:41032243..41032267 (25 bp)
GATCTGAGATCTGCATTTCGGTGGA
LOC_Os01g70280
OsAffx.23987.1.S1_at--712--6931Chr01:41032317..41032341 (25 bp)
GTAGGTCAGTGGACATTGCCATTCT
LOC_Os01g70280
OsAffx.23987.1.S1_at--524--1551Chr01:41032466..41032490 (25 bp)
AGCTTGGATGGAACTCTCACCTTGT
LOC_Os01g70280
Target Sequence
TCGTTCCCAGCACCAATGTTGATGATGATGATGGTGATGGCACCCTCTTCATCATGGAGAGGGTCGTTAAACCGGAGTCG
CCGAGAAGTTCACCGTCGCACAGCGATCAGTTCGAGGCTGTTTTCTACCGAACGCAGAGCTCTGTCCGCAGTGTTTCGTC
CACCTGCAAACCTCTACCTCCACCGCCTTTCGTCAGAGACCCCAAATTCTCCAACACACGCACCACGATCAACTCGTACG
CGGTGGTCAGTGGTGGATCTGAGATCTGCATTTCGGTGGAGGGTGCTGGCACTTACTGCATGGACACAGTGAAGCATACT
TGGAGGCATGTAGGTCAGTGGACATTGCCATTCTATGGCAAGGTTGAGTATGTACCTGAGCTCAAGCTATGGTTTGGCCT
CTCTGACAAGACCAATCACTTGGCTGCTACTGATCTCTCCGCCATGGATGACTGCTTCCAGAGGCCAGAGCTAGTGAGAG
CTTGGATGGAACTCTCACCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23987.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis