Browse Element(s) Details


OsAffx.23992.1.S1_at

Description tigr:9629.m06980
TID=OsAffx.23992.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g706404/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70590OsAffx.2448.1.S1_at10/111+41202224..41203138eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.1.S1_at11/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70600OsAffx.23990.2.S1_x_at2/111+41203986..41208030eukaryotic translation initiation factor 2B family protein, putative, expressed
LOC_Os01g70610OsAffx.23990.2.S1_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70610OsAffx.23990.2.S1_x_at11/111+41208631..41208948hypothetical protein
LOC_Os01g70620OsAffx.23991.1.S1_at11/111+41210028..41210252hypothetical protein
LOC_Os01g70630OsAffx.30397.1.S1_x_at9/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.3.S1_x_at8/111+41211415..41218072hypothetical protein
LOC_Os01g70630OsAffx.30397.2.S1_at5/111+41211415..41218072hypothetical protein
LOC_Os01g70640OsAffx.23992.1.S1_at4/111+41224502..41225345hypothetical protein
LOC_Os01g70650OsAffx.11805.1.S1_x_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70650OsAffx.11805.1.S1_at11/111+41226270..41226695Subtilisin N-terminal Region family protein
LOC_Os01g70660Os.31355.2.S1_x_at11/111+41229343..41234287potassium uptake protein, expressed
LOC_Os01g70670Os.18167.1.A1_at10/111+41242189..41247610BTB/POZ domain containing protein, expressed
LOC_Os01g70680Os.32389.2.S1_at11/111+41248727..41249320Gamma-thionins family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23992.1.S1_at--300--1991Chr01:41224188..41224212 (25 bp)
ACTCGCCGATGCCATCAATGTCGAA
NONE
OsAffx.23992.1.S1_at--128--3191Chr01:41224203..41224227 (25 bp)
CAATGTCGAACCACAGCCTTTGCTA
NONE
OsAffx.23992.1.S1_at--21--3971Chr01:41224311..41224335 (25 bp)
CGGATGCCGACCTACAAGGCAGAGG
NONE
OsAffx.23992.1.S1_at--51--6111Chr01:41224343..41224367 (25 bp)
GAGTCGCTAGCTTATGTGTTCTTGA
NONE
OsAffx.23992.1.S1_at--1082--8671Chr01:41224357..41224381 (25 bp)
TGTGTTCTTGAACGGTCTGCTCCAG
NONE
OsAffx.23992.1.S1_at--79--1551Chr01:41224380..41224404 (25 bp)
AGCTTTTTCTCCTCGACGTCGAGCT
NONE
OsAffx.23992.1.S1_at--895--9371Chr01:41224398..41224430 (25 bp)
TCGAGCTACGTGTCCGCAACGGCGG
NONE
OsAffx.23992.1.S1_at--834--2671Chr01:41224517..41224541 (25 bp)
AAGCGTGACCGCAGGGCGATCCTCG
LOC_Os01g70640
OsAffx.23992.1.S1_at--438--4611Chr01:41224569..41224593 (25 bp)
GCGACGACATCAATTGTGGCCTGGT
LOC_Os01g70640
OsAffx.23992.1.S1_at--811--3171Chr01:41224580..41224604 (25 bp)
AATTGTGGCCTGGTCGAGCCCAAGC
LOC_Os01g70640
OsAffx.23992.1.S1_at--232--2631Chr01:41224601..41224625 (25 bp)
AAGCCCCGTGTCGTGGCCTTGTCGG
LOC_Os01g70640
Target Sequence 
ACTCGCCGATGCCATCAATGTCGAACCACAGCCTTTGCTACTTCAGGCTCACCCACCGCGCTGAGCAGGAGCTCGCCGAG
CCAGCATCCAATCCCGCGCCACCGCAGGAGCTCGCTACGCGCGCGGATGCCGACCTACAAGGCAGAGGGGAGCTCGAGTC
GCTAGCTTATGTGTTCTTGAACGGTCTGCTCCAGCTTTTTCTCCTCGACGTCGAGCTACGTGTCCGCAACGGCGGTGGAG
AGGGCACGGGCCGAGAACGCGAAGTGAGCGGGCATGTGGAGCTGGAGCAGAGCGAGGTGCGGATGCAGACGGCGTGGAAG
CGTGACCGCAGGGCGATCCTCGCCGTCGAACTTCTTCTTCCTCCCGACGGCGACGACATCAATTGTGGCCTGGTCGAGCC
CAAGCCCCGTGTCGTGGCCTTGTCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis