Browse Element(s) Details


OsAffx.24049.1.S1_at

Description tigr:9630.m00044
TID=OsAffx.24049.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0141010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01390OsAffx.22492.1.S1_x_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01390OsAffx.22492.1.S1_at1/112+230669..236824retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.5.S1_x_at3/112+237453..240670retrotransposon protein, putative, unclassified
LOC_Os02g01400Os.31312.2.S1_x_at2/112+237453..240670retrotransposon protein, putative, unclassified
LOC_Os02g01410OsAffx.24049.1.S1_at10/112+247646..248321hypothetical protein
LOC_Os02g01420Os.47463.1.S1_x_at6/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01420Os.14491.2.S1_x_at5/112+249876..253000transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01430NANA2+255592..258924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g01440Os.27378.1.A1_at5/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01440Os.50281.1.S1_at1/112+261348..265160GTP-binding protein, putative, expressed
LOC_Os02g01450Os.53110.1.S1_at11/112+265795..268839expressed protein
LOC_Os02g01460NANA2+269817..271352retrotransposon protein, putative, unclassified
LOC_Os02g01470NANA2+271926..273503retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24049.1.S1_at--897--2511Chr02:248234..248258 (25 bp)
AACTTCGACGCGGTTGTGACGATGG
LOC_Os02g01410
OsAffx.24049.1.S1_at--258--7651Chr02:248200..248224 (25 bp)
GGGATGGCCTCGACAGTGAGCTTCT
LOC_Os02g01410
OsAffx.24049.1.S1_at--958--5651Chr02:248189..248213 (25 bp)
GACAGTGAGCTTCTGCTTCTACGAC
LOC_Os02g01410
OsAffx.24049.1.S1_at--451--10591Chr02:248179..248203 (25 bp)
TTCTGCTTCTACGACACCATTGGAC
LOC_Os02g01410
OsAffx.24049.1.S1_at--652--10571Chr02:248173..248197 (25 bp)
TTCTACGACACCATTGGACCTATGC
LOC_Os02g01410
OsAffx.24049.1.S1_at--104--10831Chr02:248160..248184 (25 bp)
TTGGACCTATGCACCGTCTTCGCCA
LOC_Os02g01410
OsAffx.24049.1.S1_at--602--6631Chr02:248117..248141 (25 bp)
GTTGTGATGGGATTTTCTTCTCTGC
LOC_Os02g01410
OsAffx.24049.1.S1_at--403--811Chr02:248111..248135 (25 bp)
ATGGGATTTTCTTCTCTGCCCAACA
LOC_Os02g01410
OsAffx.24049.1.S1_at--1059--5751NONE
GACGTGCCAGATCGACACCAGGTGT
NONE
OsAffx.24049.1.S1_at--1045--1691Chr02:247702..247723 (22 bp)
ACCAGGTGTCATCTCGGGCTTTGGA
LOC_Os02g01410
OsAffx.24049.1.S1_at--603--4871Chr02:247685..247709 (25 bp)
GCTTTGGATGAAAATATCGTCTTGT
LOC_Os02g01410
Target Sequence 
AACTTCGACGCGGTTGTGACGATGGGGTGTGTCGGGGATGGCCTCGACAGTGAGCTTCTGCTTCTACGACACCATTGGAC
CTATGCACCGTCTTCGCCACTGCAACCGCCGGCGGTAGTTGTGATGGGATTTTCTTCTCTGCCCAACACCACGACGTGCC
AGATCGACACCAGGTGTCATCTCGGGCTTTGGATGAAAATATCGTCTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis