Browse Element(s) Details


OsAffx.24056.1.S1_x_at

Description tigr:9630.m00094
TID=OsAffx.24056.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0195011/11transposon protein, putative, unclassified
LOC_Os01g642006/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g01910OsAffx.11861.1.S1_at11/112+495570..496075hypothetical protein
LOC_Os02g01910OsAffx.11861.1.S1_x_at11/112+495570..496075hypothetical protein
LOC_Os02g01920Os.10543.1.S1_at11/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01920OsAffx.2480.1.S1_at5/112+496748..500330diphosphomevalonate decarboxylase family protein, expressed
LOC_Os02g01930Os.50322.1.S1_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.9094.1.S2_s_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.50322.1.S2_at11/112+500341..504146expressed protein
LOC_Os02g01930Os.56070.1.S1_x_at1/112+500341..504146expressed protein
LOC_Os02g01940OsAffx.11862.1.S1_at11/112+509377..517148jmjC domain containing protein
LOC_Os02g01950OsAffx.24056.1.S1_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01950OsAffx.24056.1.S1_x_at11/112+518032..522644transposon protein, putative, unclassified
LOC_Os02g01960Os.20525.1.S1_at11/112+534963..538203Kinesin light chain, putative, expressed
LOC_Os02g01970OsAffx.24057.1.S1_at10/112+540144..544923expressed protein
LOC_Os02g01980Os.24700.1.A1_at11/112+545700..548055GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24056.1.S1_x_at--534--6512Chr02:522082..522106 (25 bp)
GATATAATCTGCCTTTTGCACCATT
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--86--4451Chr02:522092..522116 (25 bp)
GCCTTTTGCACCATTTGTTAGAGTA
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--102--6092Chr02:522112..522136 (25 bp)
GAGTATCTGGACATGGGAACACAAT
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--585--332Chr02:522135..522159 (25 bp)
ATACTATTTGGTTGTGCTTTTATAC
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--965--2392Chr02:522175..522199 (25 bp)
AAACTTTTGAGTGGCTCTTCAGAGC
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--1105--3471Chr02:522249..522273 (25 bp)
CAGGATGGTGCTATAAGGGCAGCAA
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--363--52Chr02:522307..522331 (25 bp)
ATTGTTTCTTCCATATAGTCTCAAA
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--1098--6032Chr02:522341..522365 (25 bp)
GAGATCTGGTTCTCTATTCAAGAAG
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--107--10291Chr02:522539..522563 (25 bp)
TTTCTACCCTTTCATTCAATCAACA
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--119--7391Chr02:522571..522595 (25 bp)
GTGAGGGTACACACTTAGTGCTGTT
LOC_Os02g01950
OsAffx.24056.1.S1_x_at--476--1131Chr02:522587..522611 (25 bp)
AGTGCTGTTGGCAATTACACAAATC
LOC_Os02g01950
Target Sequence 
GATATAATCTGCCTTTTGCACCATTTGTTAGAGTATCTGGACATGGGAACACAATACTATTTGGTTGTGCTTTTATACAT
GATGAAACAACTGAAACTTTTGAGTGGCTCTTCAGAGCTTTTTTGAAAGCAATGAATGGAAAGCAACCAAAGACAATAAT
TACTGATCAGGATGGTGCTATAAGGGCAGCAATCAAAAATATATTCACAGAAGCCAAACATCGAAATTGTTTCTTCCATA
TAGTCTCAAAAGCTCTGAAGAGATCTGGTTCTCTATTCAAGAAGAGACAAGGTCTTTATGACATATACAATGATATCATA
CACAACTCATTGACTGAAGAAGAATTTGAGTTTCTTTGGGAGGATATGATTCAAGTTTTTAATTTGCAAGACATCAATTT
TCTGAGAAACATGTGGGAAATCAGAAAAAGATTTATTCCAGTGTATTTCAAAACAAATTTCTACCCTTTCATTCAATCAA
CAGCACTAAGTGAGGGTACACACTTAGTGCTGTTGGCAATTACACAAATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24056.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis