Browse Element(s) Details


OsAffx.24079.1.S1_at

Description tigr:9630.m00227
TID=OsAffx.24079.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=56038-53215
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0309011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03050OsAffx.24078.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03050Os.49378.1.S1_at11/112+1198657..1202304ribosomal RNA adenine dimethylase family protein, expressed
LOC_Os02g03060Os.51694.1.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.2.S1_at11/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03060Os.3428.1.S1_x_at10/112+1207635..1211225Cell division control protein 2 homolog 2, putative, expressed
LOC_Os02g03070Os.10080.1.S1_at10/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03070OsAffx.30891.1.S1_at1/112+1213995..1218034shrunken seed protein, putative, expressed
LOC_Os02g03080Os.48733.1.A1_at9/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03080Os.48081.1.S1_at1/112+1219306..1222866Eukaryotic translation initiation factor 3 subunit 8, putative, expressed
LOC_Os02g03090OsAffx.24079.1.S1_at11/112+1223725..1226826expressed protein
LOC_Os02g03100Os.5272.1.S1_at11/112+1227321..1230217NADP-dependent D-sorbitol-6-phosphate dehydrogenase, putative, expressed
LOC_Os02g03110Os.18465.1.S1_at11/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03110Os.18465.2.S1_x_at9/112+1231029..1234484CDP-diacylglycerol-inositol 3-phosphatidyltransferase 1, putative, expressed
LOC_Os02g03120Os.54770.1.S1_at10/112+1237099..1240160Endoglucanase 1 precursor, putative, expressed
LOC_Os02g03130NANA2+1245577..1247286hypothetical protein
LOC_Os02g03140NANA2+1249053..1249268inhibitor I family protein
LOC_Os02g03150NANA2+1250017..1250226inhibitor I family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24079.1.S1_at--34--5991Chr02:1224835..1224859 (25 bp)
GAGAAAGTAACACGTGCCTCACACT
LOC_Os02g03090
OsAffx.24079.1.S1_at--3--3471Chr02:1224810..1224834 (25 bp)
CAGTGGTGGTATCTTTCTTGTCATC
LOC_Os02g03090
OsAffx.24079.1.S1_at--691--551Chr02:1224771..1224795 (25 bp)
ATCCGGATGATCGAATGGCTTTGAA
LOC_Os02g03090
OsAffx.24079.1.S1_at--794--5971Chr02:1224638..1224743 (25 bp)
GAGAACTTTGGAGGCCTATCCTGGG
LOC_Os02g03090
OsAffx.24079.1.S1_at--649--1691Chr02:1224545..1224569 (25 bp)
AGCCACTCTTTTCTGTATCCATAAC
LOC_Os02g03090
OsAffx.24079.1.S1_at--911--6411Chr02:1224502..1224526 (25 bp)
GATCTTTGCCATACCTCAATGGTAG
LOC_Os02g03090
OsAffx.24079.1.S1_at--578--3111Chr02:1224425..1224449 (25 bp)
AATATTAGACCTGTTGCTGCGGCTC
LOC_Os02g03090
OsAffx.24079.1.S1_at--906--3631Chr02:1224020..1224422 (25 bp)
CTTCCTCGTGGATATTCAGTCATTC
LOC_Os02g03090
OsAffx.24079.1.S1_at--115--9651Chr02:1224005..1224028 (24 bp)
TCAGTCATTCCCTTATCTGCTGAAG
LOC_Os02g03090
OsAffx.24079.1.S1_at--946--8471Chr02:1223976..1224000 (25 bp)
TGGCGGAATTCGTCAGTCTGCTACC
LOC_Os02g03090
OsAffx.24079.1.S1_at--102--7811Chr02:1223944..1223968 (25 bp)
GGTCAGGATGTGCTCCTTGACGACA
LOC_Os02g03090
Target Sequence 
GAGAAAGTAACACGTGCCTCACACTCAGTGGTGGTATCTTTCTTGTCATCCGGCAATGATACTGATCCGGATGATCGAAT
GGCTTTGAAAGAACAACTTGCTTTTTACTATATCAAGAGAACTTTGGAGGCCTATCCTGGGGTAACTCCCTTTGAAGGAT
TAGCATCAGGAGTTGCAGCACTCGCCCGACATCTTCCTGCTGGGAGTCCAGCCACTCTTTTCTGTATCCATAACCTTGTT
GTCAAGGCTAAAGATCTTTGCCATACCTCAATGGTAGAGGACAAATCCTTGTGGAGGTCATGGGAAGGTAGCACAGAACC
TTGTAAGAAAATATTAGACCTGTTGCTGCGGCTCATCTTCCTCGTGGATATTCAGTCATTCCCTTATCTGCTGAAGGAGC
TGGCGGAATTCGTCAGTCTGCTACCGAAGGAAGGTCAGGATGTGCTCCTTGACGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24079.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis