Browse Element(s) Details


OsAffx.24081.1.S1_at

Description tigr:9630.m00240
TID=OsAffx.24081.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0339011/11hypothetical protein
LOC_Os06g208501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03340Os.27310.1.S1_at10/112+1347143..1351333Transcription factor Tfb4 family protein, expressed
LOC_Os02g03350Os.35344.3.S1_x_at9/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350Os.35344.18.S1_x_at8/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03350OsAffx.22940.5.S1_x_at2/112+1352190..1358088transposon protein, putative, Mutator sub-class
LOC_Os02g03360OsAffx.11874.1.S1_s_at11/112+1360465..1363694expressed protein
LOC_Os02g03360Os.13889.1.S1_at10/112+1360465..1363694expressed protein
LOC_Os02g03370Os.49238.1.S1_at10/112+1366149..1369039hypothetical protein
LOC_Os02g03380OsAffx.15220.1.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.2.S1_s_at11/112+1369986..1374150hypothetical protein
LOC_Os02g03380OsAffx.15220.5.S1_at9/112+1369986..1374150hypothetical protein
LOC_Os02g03380Os.13877.1.S1_at3/112+1369986..1374150hypothetical protein
LOC_Os02g03390OsAffx.24081.1.S1_at11/112+1375705..1376318hypothetical protein
LOC_Os02g03400Os.53067.1.S1_at11/112+1379250..1382389Microtubule associated protein containing protein, expressed
LOC_Os02g03410Os.2355.1.S1_at11/112+1387873..1394276Protein kinase domain containing protein, expressed
LOC_Os02g03420Os.54336.1.S1_at11/112+1394865..1397141PPR868-14, putative, expressed
LOC_Os02g03430Os.51630.1.A1_at11/112+1397698..1398983expressed protein
LOC_Os02g03440OsAffx.11876.1.S1_at10/112+1399613..1401222Sm protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24081.1.S1_at--883--6371Chr02:1375783..1375807 (25 bp)
GATCGAACGCCCTCTGCTTTCTCGA
LOC_Os02g03390
OsAffx.24081.1.S1_at--1019--9071Chr02:1375797..1375821 (25 bp)
TGCTTTCTCGACGTGGACTCCTCAT
LOC_Os02g03390
OsAffx.24081.1.S1_at--440--4551Chr02:1375854..1376159 (25 bp)
GCCCATCTATCTGCCGGCAATTGAA
LOC_Os02g03390
OsAffx.24081.1.S1_at--819--451Chr02:1375862..1376167 (25 bp)
ATCTGCCGGCAATTGAAAAGATTGA
LOC_Os02g03390
OsAffx.24081.1.S1_at--1100--2751Chr02:1376175..1376199 (25 bp)
AAGACGGTTTCTTCTCTGACCAAGG
LOC_Os02g03390
OsAffx.24081.1.S1_at--153--10571Chr02:1376183..1376207 (25 bp)
TTCTTCTCTGACCAAGGATGCCTTG
LOC_Os02g03390
OsAffx.24081.1.S1_at--1097--1691Chr02:1376193..1376217 (25 bp)
ACCAAGGATGCCTTGAAGGTTCTTC
LOC_Os02g03390
OsAffx.24081.1.S1_at--466--1011Chr02:1376209..1376233 (25 bp)
AGGTTCTTCAAGACGCTGGGGACAA
LOC_Os02g03390
OsAffx.24081.1.S1_at--881--2952Chr02:1376232..1376256 (25 bp)
AAGGCCAAGACGCATCTCAGGATCA
LOC_Os02g03390
OsAffx.24081.1.S1_at--632--5791Chr02:1376240..1376264 (25 bp)
GACGCATCTCAGGATCATGCACAAC
LOC_Os02g03390
OsAffx.24081.1.S1_at--257--9531Chr02:1376246..1376270 (25 bp)
TCTCAGGATCATGCACAACCAGTAC
LOC_Os02g03390
Target Sequence 
GATCGAACGCCCTCTGCTTTCTCGACGTGGACTCCTCATCGTCGTCCTCGTCCCCACGCCGCCGATCCCACGCCCATCTA
TCTGCCGGCAATTGAAAAGATTGAGAAGATGAAGACGGTTTCTTCTCTGACCAAGGATGCCTTGAAGGTTCTTCAAGACG
CTGGGGACAAGGCCAAGACGCATCTCAGGATCATGCACAACCAGTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24081.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis