Browse Element(s) Details


OsAffx.24089.1.S1_x_at

Description tigr:9630.m00291
TID=OsAffx.24089.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0387011/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g538001/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os03g537901/11Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03840Os.17347.1.S1_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.17347.1.S2_at11/112+1617326..1630163expressed protein
LOC_Os02g03840Os.21055.1.A1_at4/112+1617326..1630163expressed protein
LOC_Os02g03850Os.49187.1.S1_at11/112+1631971..1636772Glycosyl transferase family, a/b domain containing protein, expressed
LOC_Os02g03860Os.8662.1.S1_at11/112+1637581..1641852ATP synthase 24 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os02g03870OsAffx.24089.1.S1_x_at11/112+1643997..1648808Glycosyl hydrolase family 3 N terminal domain containing protein, expressed
LOC_Os02g03880NANA2+1650809..1651178Mitochondrial import receptor subunit TOM22 homolog, putative, expressed
LOC_Os02g03890Os.15310.1.S1_at10/112+1652080..1655123Nuclear transport factor 2 domain containing protein, expressed
LOC_Os02g03900Os.54147.1.S1_at11/112+1658576..1662644NRAMP family Mn2+/Fe2+ transporters containing protein, expressed
LOC_Os02g03910OsAffx.24088.2.S1_at11/112+1664217..1665802F-box domain containing protein
LOC_Os02g03920NANA2+1666678..1667007hypothetical protein
LOC_Os02g03930OsAffx.11882.1.S1_at11/112+1667744..1672318pentatricopeptide, putative, expressed
LOC_Os02g03940OsAffx.11883.1.S1_at11/112+1672931..1676493expressed protein
LOC_Os02g03940Os.15568.1.S1_at10/112+1672931..1676493expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24089.1.S1_x_at--368--1131Chr02:1644806..1644830 (25 bp)
AGTGCGGCGGCTGGACCATCACCTG
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--455--8531Chr02:1644795..1644819 (25 bp)
TGGACCATCACCTGGCAGGGCCTCG
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--700--6351Chr02:1644711..1644735 (25 bp)
GATGCCGCCACGGAGGTCGTCTTCG
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--514--9452Chr03:30788028..30788047 (20 bp)
TCGGCGACAACCTGAACCTGACCAT
LOC_Os03g53790
OsAffx.24089.1.S1_x_at--124--7571Chr02:1644558..1644582 (25 bp)
GGGCCGAGCGTGATCCAGAACGTCT
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--46--7411Chr02:1644483..1644507 (25 bp)
GTGATCGAGCCGTACATGGACGCCA
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--1153--2111Chr02:1644470..1644494 (25 bp)
ACATGGACGCCATCGACGCGCTGGT
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--460--9672Chr03:30807331..30807351 (21 bp)
TCAGCGACGTGCTGTTCGGCGACTA
LOC_Os03g53800
OsAffx.24089.1.S1_x_at--935--9111Chr02:1644401..1644425 (25 bp)
TGCTGTTCGGCGACTACGAGTTCAC
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--63--1911Chr02:1644360..1644384 (25 bp)
ACGTGGTTCCGGTCGGTGGAGCAGC
LOC_Os02g03870
OsAffx.24089.1.S1_x_at--962--5451Chr02:1644328..1644352 (25 bp)
GAACGTCGGCGACGAGCACTACGAC
LOC_Os02g03870
Target Sequence 
AGTGCGGCGGCTGGACCATCACCTGGCAGGGCCTCGCCGGGAACGACCTCACCGCCGGCGGCACCACCATCCTCGACGGC
ATCCGCCGCGCCGTGGATGCCGCCACGGAGGTCGTCTTCGCCGAGGCGCCCGACGCCGGCTTCATGCGGCGGAACGCGGG
GAGGTTCGACGCCGCCGTGGTCGTCGTCGGCGAGCCGCCGTACGCCGAGACGCTCGGCGACAACCTGAACCTGACCATCC
CGGCGCCGGGGCCGAGCGTGATCCAGAACGTCTGCGGCGGCGGCGTGAGGTGCGTGGTGGTGGTGGTCTCCGGGCGGCCG
CTGGTGATCGAGCCGTACATGGACGCCATCGACGCGCTGGTGGCGGCGTGGCTGCCGGGGACGGAGGGGCAGGGCGTCAG
CGACGTGCTGTTCGGCGACTACGAGTTCACCGGGAAGCTGGCGAGGACGTGGTTCCGGTCGGTGGAGCAGCTGCCGATGA
ACGTCGGCGACGAGCACTACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24089.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis