Browse Element(s) Details


OsAffx.24103.1.S1_at

Description tigr:9630.m00416
TID=OsAffx.24103.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0499011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04970OsAffx.11895.1.S1_at11/112+2331774..2345463expressed protein
LOC_Os02g04980OsAffx.8980.1.S1_at5/112+2352125..2357015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04980Os.27639.1.S1_x_at5/112+2352125..2357015retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g04990OsAffx.24103.1.S1_at11/112+2367921..2368406hypothetical protein
LOC_Os02g05000Os.52587.1.S1_at11/112+2369614..2371346expressed protein
LOC_Os02g05020Os.40855.5.S1_x_at11/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.2.S1_x_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_at9/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40360.1.S1_x_at8/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_x_at7/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.11895.1.S1_at6/112+2377939..2387189expressed protein
LOC_Os02g05020OsAffx.21921.1.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05020Os.40855.4.S1_at1/112+2377939..2387189expressed protein
LOC_Os02g05030Os.49155.1.S1_at11/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed
LOC_Os02g05030OsAffx.32296.1.A1_at4/112+2388397..2394343sucrose phosphate phosphatase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24103.1.S1_at--841--831Chr02:2367987..2368011 (25 bp)
ATGGAGTATGGTAGCCTGCCTCGGC
LOC_Os02g04990
OsAffx.24103.1.S1_at--178--9191Chr02:2368003..2368027 (25 bp)
TGCCTCGGCATACCATGAGCTTCTG
LOC_Os02g04990
OsAffx.24103.1.S1_at--745--2111Chr02:2368099..2368123 (25 bp)
ACATGGTGGTCACCGCTGACCAGAG
LOC_Os02g04990
OsAffx.24103.1.S1_at--444--10131Chr02:2368140..2368164 (25 bp)
TATGACCTCGGCAAGTACGCCATTC
LOC_Os02g04990
OsAffx.24103.1.S1_at--837--4071Chr02:2368189..2368213 (25 bp)
CGACCTATCTCAGGGCTTCGGATTC
LOC_Os02g04990
OsAffx.24103.1.S1_at--1095--1071Chr02:2368200..2368224 (25 bp)
AGGGCTTCGGATTCGCTTGACTCCA
LOC_Os02g04990
OsAffx.24103.1.S1_at--1016--9871Chr02:2368253..2368277 (25 bp)
TACATCCTTCGATACAACCCGGTCG
LOC_Os02g04990
OsAffx.24103.1.S1_at--229--1811Chr02:2368269..2368293 (25 bp)
ACCCGGTCGCTGGTGGTTGCTACCA
LOC_Os02g04990
OsAffx.24103.1.S1_at--1067--8571Chr02:2368282..2368306 (25 bp)
TGGTTGCTACCATGGGCTCATCTAC
LOC_Os02g04990
OsAffx.24103.1.S1_at--135--951Chr02:2368317..2368341 (25 bp)
AGGAATGGCGCTGTTGTGGTCTCTC
LOC_Os02g04990
OsAffx.24103.1.S1_at--389--10291Chr02:2368352..2368376 (25 bp)
TTTCGACCTGATTCCTACGCTGTGG
LOC_Os02g04990
Target Sequence 
ATGGAGTATGGTAGCCTGCCTCGGCATACCATGAGCTTCTGCCCTGCCTCCCTCTCCAGGTGGTTTGGCGGCACGGAGCG
GATGAGGTTCGTGCTCCTCGGCGGCAACCACAACATGGTGGTCACCGCTGACCAGAGTAGCCGCACCGTCCTCTATGACC
TCGGCAAGTACGCCATTCGCACCCTGTCTGCCTTCGTCTTCCCGACCTATCTCAGGGCTTCGGATTCGCTTGACTCCATC
ACCGCCAGCATCTCGGCGACGACCTCTACATCCTTCGATACAACCCGGTCGCTGGTGGTTGCTACCATGGGCTCATCTAC
GGCGGCGACGAGGAATGGCGCTGTTGTGGTCTCTCGCCGCCTTCCTTTCGACCTGATTCCTACGCTGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24103.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis