Browse Element(s) Details


OsAffx.24125.1.S1_s_at

Description tigr:9630.m00558
TID=OsAffx.24125.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AT5g66170K2A18_25
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0629010/11Rhodanese-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06230Os.51693.1.S1_at7/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06230Os.53737.1.S1_at4/112+3114376..3118797retrotransposon protein, putative, unclassified
LOC_Os02g06240OsAffx.11913.1.S1_at11/112+3119601..3120817Leucine Rich Repeat family protein
LOC_Os02g06250OsAffx.11914.1.S1_at11/112+3124209..3126567Leucine Rich Repeat family protein
LOC_Os02g06260OsAffx.11915.2.S1_at11/112+3126964..3129254Leucine Rich Repeat family protein, expressed
LOC_Os02g06270Os.24551.4.S1_at9/112+3132848..3135043Leucine Rich Repeat family protein
LOC_Os02g06280OsAffx.24124.1.S1_at11/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06280Os.46824.2.S1_at1/112+3136181..3137963Leucine Rich Repeat family protein
LOC_Os02g06290OsAffx.24125.1.S1_at11/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06290OsAffx.24125.1.S1_s_at10/112+3141995..3144096Rhodanese-like domain containing protein, expressed
LOC_Os02g06300Os.14283.1.A1_at11/112+3144057..3152625GTP-binding protein LepA containing protein, expressed
LOC_Os02g06310Os.45422.1.S1_x_at2/112+3154192..3157440hypothetical protein
LOC_Os02g06320OsAffx.24127.1.S1_at10/112+3158637..3160600RNA recognition motif 2 family protein
LOC_Os02g06330OsAffx.24128.1.S1_s_at11/112+3163942..3165032AP2 domain containing protein, expressed
LOC_Os02g06340Os.24778.1.S1_at11/112+3166615..3170814EH-domain containing protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24125.1.S1_s_at--575--1731Chr02:3142447..3142674 (25 bp)
ACCATTACCTCGATGTCAGGCTTGG
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--543--1751Chr02:3142725..3142746 (22 bp)
ACCTCTCAGTGACTCCCAGTGGGAA
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--104--8051Chr02:3142902..3142926 (25 bp)
GGAGAAGAACCCACACTTTGTAGAT
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--440--8491Chr02:3142931..3142955 (25 bp)
TGGCTTCACTCTTCGGCAAGGATGA
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--1129--5931NONE
GAGCACCTGATTGTGGCTTGCAACA
NONE
OsAffx.24125.1.S1_s_at--225--5151Chr02:3143585..3143609 (25 bp)
GCAACACAGGTGTGCGATCCAGGCT
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--230--891Chr02:3143605..3143629 (25 bp)
AGGCTCGCGACTAAGGACCTTTTGG
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--562--7491Chr02:3143759..3143783 (25 bp)
GTGGTTACCAATCATTTCTCCGAAG
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--921--1151Chr02:3143813..3143837 (25 bp)
AGTAATTATCAGCTGCAGTTCCCCT
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--288--591Chr02:3143930..3143954 (25 bp)
ATCCAAGCTTTGCAGTGTGTACGGT
LOC_Os02g06290
OsAffx.24125.1.S1_s_at--685--591Chr02:3144034..3144058 (25 bp)
ATGCCATGTCAACTGCTTCTGTTGT
LOC_Os02g06290
Target Sequence
ACCATTACCTCGATGTCAGGCTTGGGAAGGATTTTGACAAGGCGCATGCTGACGGTGCTCGCAACATTTCCTACTACCTC
TCAGTGACTCCCAGTGGGAAGGAGAAGAACCCACACTTTGTAGATGAAGTGGCTTCACTCTTCGGCAAGGATGAGCACCT
GATTGTGGCTTGCAACACAGGTGTGCGATCCAGGCTCGCGACTAAGGACCTTTTGGACGCGGGATTCAAGAATGTGAGGA
ACCTGAAAGGTGGTTACCAATCATTTCTCCGAAGTGAAAGCCAGCAACCTGCAGCTCATCAACAGTAATTATCAGCTGCA
GTTCCCCTGCTCGGTGCTCGCTATCCGGGAGATGGAAAATCGTTTTCTTCTTATGCATAATTTCAATGGTCGTGAAGACG
AATAAATCAGGATCAGTTGAATCCAAGCTTTGCAGTGTGTACGGTTTAGCAAGAAAATCTCATAATGTCATCAATCAATA
AACCTTCAGAAAATCTTTAAGAAGTGTTGCCATCAGTGAGGCTAATGCCATGTCAACTGCTTCTGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24125.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis