Browse Element(s) Details


OsAffx.24149.1.S1_s_at

Description tigr:9630.m00706
TID=OsAffx.24149.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0758011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07540NANA2+3902055..3908150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g07550OsAffx.2538.1.S1_at11/112+3909434..3910005Gamma-thionins family protein, expressed
LOC_Os02g07560NANA2+3912861..3916103transposon protein, putative, unclassified
LOC_Os02g07570NANA2+3916725..3922880transposon protein, putative, unclassified
LOC_Os02g07580OsAffx.24149.1.S1_s_at11/112+3927873..3928668hypothetical protein
LOC_Os02g07580Os.23520.1.A1_at4/112+3927873..3928668hypothetical protein
LOC_Os02g07590OsAffx.11929.1.S1_at10/112+3929703..3930203NA
LOC_Os02g07600OsAffx.24150.1.S1_x_at11/112+3932581..3933219Kunitz-type trypsin inhibitor, putative
LOC_Os02g07610Os.26886.1.S1_x_at10/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610Os.26886.3.S1_x_at5/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610OsAffx.16244.1.S1_x_at1/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.2.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.6.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.16467.1.S1_at9/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.3425.1.S1_at1/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24149.1.S1_s_at--679--7251Chr02:3927903..3927927 (25 bp)
GTCCTGCTCCTCCTGGCCTTTGGTG
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--310--6631Chr02:3928043..3928067 (25 bp)
GTTGGTGAGGCCAAGACACATGAAT
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--643--2751Chr02:3928055..3928079 (25 bp)
AAGACACATGAATACCGCAGCCATA
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--453--3091Chr02:3928065..3928089 (25 bp)
AATACCGCAGCCATACCTTCAAAGG
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--382--4431Chr02:3928074..3928098 (25 bp)
GCCATACCTTCAAAGGCGTCTGCAT
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--1104--9471Chr02:3928092..3928116 (25 bp)
TCTGCATCCACGACGATCTCTGGAA
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--406--3351Chr02:3928100..3928124 (25 bp)
CACGACGATCTCTGGAAGTACTGCG
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--232--1891Chr02:3928104..3928128 (25 bp)
ACGATCTCTGGAAGTACTGCGTCAG
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--116--2851Chr02:3928115..3928139 (25 bp)
AAGTACTGCGTCAGGGTGAGATCTA
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--225--3831Chr02:3928120..3928144 (25 bp)
CTGCGTCAGGGTGAGATCTAGGTAC
LOC_Os02g07580
OsAffx.24149.1.S1_s_at--996--371Chr02:3928135..3928159 (25 bp)
ATCTAGGTACGATGGATCATCACCG
LOC_Os02g07580
Target Sequence 
GTCCTGCTCCTCCTGGCCTTTGGTGTTGTTGGTGAGGCCAAGACACATGAATACCGCAGCCATACCTTCAAAGGCGTCTG
CATCCACGACGATCTCTGGAAGTACTGCGTCAGGGTGAGATCTAGGTACGATGGATCATCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24149.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis