Browse Element(s) Details


OsAffx.24150.1.S1_x_at

Description tigr:9630.m00708
TID=OsAffx.24150.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=antimicrobial peptide d2 (so-d2) (defensin d2) (fragment). (spinach
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0760011/11Kunitz-type trypsin inhibitor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07540NANA2+3902055..3908150retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g07550OsAffx.2538.1.S1_at11/112+3909434..3910005Gamma-thionins family protein, expressed
LOC_Os02g07560NANA2+3912861..3916103transposon protein, putative, unclassified
LOC_Os02g07570NANA2+3916725..3922880transposon protein, putative, unclassified
LOC_Os02g07580OsAffx.24149.1.S1_s_at11/112+3927873..3928668hypothetical protein
LOC_Os02g07580Os.23520.1.A1_at4/112+3927873..3928668hypothetical protein
LOC_Os02g07590OsAffx.11929.1.S1_at10/112+3929703..3930203NA
LOC_Os02g07600OsAffx.24150.1.S1_x_at11/112+3932581..3933219Kunitz-type trypsin inhibitor, putative
LOC_Os02g07610Os.26886.1.S1_x_at10/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610Os.26886.3.S1_x_at5/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610OsAffx.16244.1.S1_x_at1/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.2.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.6.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.16467.1.S1_at9/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.3425.1.S1_at1/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0030414molecular_functionprotease inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24150.1.S1_x_at--1097--3811Chr02:3933026..3933050 (25 bp)
CTGCTGCCAAGATGTGCCATGATCG
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--249--9111Chr02:3933027..3933051 (25 bp)
TGCTGCCAAGATGTGCCATGATCGT
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--648--771Chr02:3933037..3933061 (25 bp)
ATGTGCCATGATCGTAGCCAAACCT
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--174--6331Chr02:3933046..3933070 (25 bp)
GATCGTAGCCAAACCTTCAAAGGGA
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--441--10511Chr02:3933061..3933085 (25 bp)
TTCAAAGGGATGTGCTTCCGGACCT
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--266--9051Chr02:3933073..3933097 (25 bp)
TGCTTCCGGACCTCCAACTGCAACA
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--797--9011Chr02:3933091..3933115 (25 bp)
TGCAACACCAGCTGCACCAACGAGG
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--466--2591Chr02:3933109..3933133 (25 bp)
AACGAGGGCTACACCGGCGGCCACT
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--377--4411Chr02:3933128..3933152 (25 bp)
GCCACTGCACAACCTTCAGACGTCG
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--721--9651Chr02:3933143..3933167 (25 bp)
TCAGACGTCGATGCGTGTGCACCAA
LOC_Os02g07600
OsAffx.24150.1.S1_x_at--1058--4651Chr02:3933155..3933179 (25 bp)
GCGTGTGCACCAAGGAGTGTGGAGG
LOC_Os02g07600
Target Sequence 
CTGCTGCCAAGATGTGCCATGATCGTAGCCAAACCTTCAAAGGGATGTGCTTCCGGACCTCCAACTGCAACACCAGCTGC
ACCAACGAGGGCTACACCGGCGGCCACTGCACAACCTTCAGACGTCGATGCGTGTGCACCAAGGAGTGTGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24150.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis