Browse Element(s) Details


OsAffx.24163.1.S1_at

Description tigr:9630.m00780
TID=OsAffx.24163.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g082109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08160OsAffx.11937.1.S1_at11/112+4320543..4323883F-box domain containing protein, expressed
LOC_Os02g08170OsAffx.11938.1.S1_at2/112+4326072..4326885hypothetical protein
LOC_Os02g08170OsAffx.11938.1.S1_x_at1/112+4326072..4326885hypothetical protein
LOC_Os02g08180Os.10116.1.S1_at1/112+4332352..4332667Protein transport protein SEC61 gamma subunit, putative, expressed
LOC_Os02g08190Os.6022.1.S1_at10/112+4334607..4338099Protein CYPRO4, putative, expressed
LOC_Os02g08200NANA2+4341772..4342164Zinc finger, C3HC4 type family protein
LOC_Os02g08210OsAffx.24163.1.S1_at9/112+4346840..4350247hypothetical protein
LOC_Os02g08220Os.15780.1.S1_at11/112+4350869..4351990expressed protein
LOC_Os02g08230Os.4769.1.S1_at11/112+4355059..4362385Gl1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24163.1.S1_at--101--8491Chr02:4350192..4350216 (25 bp)
TGGCAACCTTGTGGAGTTATGAAGC
LOC_Os02g08210
OsAffx.24163.1.S1_at--24--5451NONE
GAACGTAGGTAGACTAGCCCACCAC
NONE
OsAffx.24163.1.S1_at--558--4851Chr02:4349533..4349554 (22 bp)
GCTAGCTGGAAAACCCCTGGACCAA
LOC_Os02g08210
OsAffx.24163.1.S1_at--623--4271NONE
CCTGGACCAATTGCCACTGCAAATT
NONE
OsAffx.24163.1.S1_at--312--5011Chr02:4348818..4348842 (25 bp)
GCAGGCATTATGGAGCATGCACCCA
LOC_Os02g08210
OsAffx.24163.1.S1_at--50--4991Chr02:4348804..4348828 (25 bp)
GCATGCACCCATGTGATGTGATATA
LOC_Os02g08210
OsAffx.24163.1.S1_at--987--5931Chr02:4347435..4347459 (25 bp)
GAGCAGTGAGGCTCTCTTCGACGAT
LOC_Os02g08210
OsAffx.24163.1.S1_at--576--5771Chr02:4347416..4347440 (25 bp)
GACGATCTCTTTCATGCGTACAAGG
LOC_Os02g08210
OsAffx.24163.1.S1_at--527--10331Chr02:4347407..4347431 (25 bp)
TTTCATGCGTACAAGGCCGAAGGTT
LOC_Os02g08210
OsAffx.24163.1.S1_at--297--4711Chr02:4347343..4347367 (25 bp)
GCGGCCCATGTTTGCAGCCTGCAAA
LOC_Os02g08210
OsAffx.24163.1.S1_at--374--2691Chr02:4347320..4347344 (25 bp)
AAGCTCCCCTGAAAGGTTGGCCCAG
LOC_Os02g08210
Target Sequence 
TGGCAACCTTGTGGAGTTATGAAGCGAACGTAGGTAGACTAGCCCACCACCTTGTGAAGCTAGCTGGAAAACCCCTGGAC
CAATTGCCACTGCAAATTGATGATGTGCAGCATGCAGCATATGGGGTCTTGCAGTTGCAGGCATTATGGAGCATGCACCC
ATGTGATGTGATATATTGTGATGGGATGGATGGATGGATGAGATTCGTCGGATTGGAAGATCTGACAGTGGAGAGAGCAG
TGAGGCTCTCTTCGACGATCTCTTTCATGCGTACAAGGCCGAAGGTTGGAAACTGGGGTGCTGATGGGCTGCGTCCGCGA
AGGGAGGCGGCCCATGTTTGCAGCCTGCAAAGCTCCCCTGAAAGGTTGGCCCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24163.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis