Browse Element(s) Details


OsAffx.24169.1.S1_x_at

Description tigr:9630.m00819
TID=OsAffx.24169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0908011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g08544Os.1983.1.S1_at11/112+4625422..4628855Homeobox protein knotted-1-like 3, putative, expressed
LOC_Os02g09050OsAffx.11943.1.S1_s_at8/112+4629504..4630087expressed protein
LOC_Os02g09060Os.17743.1.S1_at10/112+4630335..4634546Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os02g09070OsAffx.11944.1.S1_at11/112+4640149..4641458zinc-binding protein, putative, expressed
LOC_Os02g09080OsAffx.24169.1.S1_x_at11/112+4650572..4653980expressed protein
LOC_Os02g09090NANA2+4656067..4656414hypothetical protein
LOC_Os02g09100OsAffx.2548.1.S1_at11/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09100OsAffx.14016.1.S1_at1/112+4658133..4668899isoleucine-tRNA ligase, putative, expressed
LOC_Os02g09110Os.35344.3.S1_x_at10/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110Os.35344.18.S1_x_at9/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09110OsAffx.22940.5.S1_x_at3/112+4670863..4675567SWIM zinc finger family protein
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24169.1.S1_x_at--145--8471Chr02:4653549..4653573 (25 bp)
TGGCGCGAACGCGTGTGCCGCACCA
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--116--9691Chr02:4653622..4653646 (25 bp)
TCACGCCGGCGATGTACGCGCAGAT
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--995--7831Chr02:4653682..4653706 (25 bp)
GGTACGGGCCGGTGCTCGCCGACAT
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--253--4231Chr02:4653700..4653724 (25 bp)
CCGACATGGCGGACTGCGCGTTCGT
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--43--1991Chr02:4653712..4653736 (25 bp)
ACTGCGCGTTCGTCCGGCGCGCGTT
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--166--4151Chr02:4653729..4653753 (25 bp)
CGCGCGTTCCGGGTGGTCGGCGACG
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--823--7491Chr02:4653834..4653858 (25 bp)
GTGGTGCTGTGGGTGGCGCACTCGA
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--845--4691Chr02:4653900..4653924 (25 bp)
GCGGCGTCGCCGTACACGGTGCATC
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--666--7031Chr02:4653911..4653935 (25 bp)
GTACACGGTGCATCACTCTCATTTG
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--1025--2171Chr02:4653913..4653937 (25 bp)
ACACGGTGCATCACTCTCATTTGGA
LOC_Os02g09080
OsAffx.24169.1.S1_x_at--476--3771Chr02:4653926..4653950 (25 bp)
CTCTCATTTGGAGGAAGGAGCGCTC
LOC_Os02g09080
Target Sequence 
TGGCGCGAACGCGTGTGCCGCACCACCCGCGCCGCGGCGGCGGCGCCGGAGGTGTGCGCCACCGTCGGGCGCCTCACGCC
GGCGATGTACGCGCAGATGGTGGCGGCGGCGAGCGCGTGCGACGCGCTGTCGCGGTACGGGCCGGTGCTCGCCGACATGG
CGGACTGCGCGTTCGTCCGGCGCGCGTTCCGGGTGGTCGGCGACGAGCACTGCCCGGGGCTCGGCAGGCACAGCGCGGAG
GTGTACCGGGGCTTGCTCGCCGTCGCCGTCGCCGCGCTGGCGTCGGTGGTGCTGTGGGTGGCGCACTCGAGGGAGAGGCG
GCGGCGGCGCGACGCCGTGGAGCTCAGGGCGGCGGCGTCGCCGTACACGGTGCATCACTCTCATTTGGAGGAAGGAGCGC
TC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24169.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis