Browse Element(s) Details


OsAffx.24170.1.S1_at

Description tigr:9630.m00827
TID=OsAffx.24170.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0916011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09120OsAffx.11946.1.S1_at11/112+4676847..4679922tRNA synthetases class I family protein
LOC_Os02g09130Os.10794.2.S1_x_at10/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09130Os.10794.2.S1_at9/112+4681348..4689593ankryin repeat S-palmitoyl transferase, putative, expressed
LOC_Os02g09140Os.53647.1.S1_s_at11/112+4690515..4693555expressed protein
LOC_Os02g09140Os.54719.1.S1_at11/112+4690515..4693555expressed protein
LOC_Os02g09150Os.13494.1.S1_at11/112+4693858..4699297Pyrophosphate-energized vacuolar membrane proton pump, putative, expressed
LOC_Os02g09160OsAffx.24170.1.S1_at11/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.30475.1.S1_s_at4/112+4704820..4706525hypothetical protein
LOC_Os02g09160OsAffx.2812.1.S1_at1/112+4704820..4706525hypothetical protein
LOC_Os02g09170Os.22727.1.S1_at11/112+4708490..4716877Sucrose-phosphate synthase 1, putative, expressed
LOC_Os02g09180Os.7561.1.S1_at11/112+4717683..4720604CUE domain containing protein, expressed
LOC_Os02g09190OsAffx.11947.1.S1_at11/112+4721029..4722709Cytochrome P450 family protein, expressed
LOC_Os02g09200OsAffx.11948.1.S1_at11/112+4724316..4726012Cytochrome P450 family protein, expressed
LOC_Os02g09210OsAffx.11949.1.S1_at11/112+4729991..4730317hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24170.1.S1_at--807--5511Chr02:4705585..4705609 (25 bp)
GAAAATACGAATCTCCACTTGTGGT
LOC_Os02g09160
OsAffx.24170.1.S1_at--528--5211Chr02:4705577..4705601 (25 bp)
GAATCTCCACTTGTGGTCGGGCAAC
LOC_Os02g09160
OsAffx.24170.1.S1_at--70--4931Chr02:4705550..4705574 (25 bp)
GCTTGCCTAGCCTTCGTGGTGCTGT
LOC_Os02g09160
OsAffx.24170.1.S1_at--478--5391Chr02:4705522..4705546 (25 bp)
GAAGCAGGAGGTGTGTCTCCGCCAT
LOC_Os02g09160
OsAffx.24170.1.S1_at--1043--9711Chr02:4705486..4705510 (25 bp)
TCAAGCCCGTGTCCATGGCAGCGGC
LOC_Os02g09160
OsAffx.24170.1.S1_at--180--8331Chr02:4705464..4705488 (25 bp)
GGCTCGCGGCATGCTCGACAAAGGA
LOC_Os02g09160
OsAffx.24170.1.S1_at--241--5631Chr02:4705448..4705472 (25 bp)
GACAAAGGAGCCCTGCTGGCCCTAA
LOC_Os02g09160
OsAffx.24170.1.S1_at--176--4151Chr02:4705411..4705435 (25 bp)
CGCCTCCAACTTCGAGATAACCAAA
LOC_Os02g09160
OsAffx.24170.1.S1_at--260--6051Chr02:4705398..4705422 (25 bp)
GAGATAACCAAACCTCACCGTCGAT
LOC_Os02g09160
OsAffx.24170.1.S1_at--415--1751Chr02:4705387..4705411 (25 bp)
ACCTCACCGTCGATCTGTTGATATA
LOC_Os02g09160
OsAffx.24170.1.S1_at--207--4891Chr02:4704850..4705363 (25 bp)
GCTTAACTCCAGTGTGGCAATATTC
LOC_Os02g09160
Target Sequence 
GAAAATACGAATCTCCACTTGTGGTCGGGCAACCGGCTTGCCTAGCCTTCGTGGTGCTGTGGCGAAGCAGGAGGTGTGTC
TCCGCCATGGCACCATCTCTCAAGCCCGTGTCCATGGCAGCGGCTCGCGGCATGCTCGACAAAGGAGCCCTGCTGGCCCT
AACCCCCGCGACGTCGCCTCCAACTTCGAGATAACCAAACCTCACCGTCGATCTGTTGATATAAAAACACGAGATATGAG
AGATCTGCTTAACTCCAGTGTGGCAATATTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis