Browse Element(s) Details


OsAffx.24179.1.S1_x_at

Description tigr:9630.m00912
TID=OsAffx.24179.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0996011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g09930Os.24972.1.S1_at11/112+5151783..5158882glycosyltransferase 10, putative, expressed
LOC_Os02g09940Os.4251.1.S1_at11/112+5166995..5167988AhpC/TSA family protein, expressed
LOC_Os02g09950Os.35344.18.S1_x_at9/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950Os.35344.3.S1_x_at8/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_at7/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09950OsAffx.22940.5.S1_x_at4/112+5168444..5175359transposon protein, putative, Mutator sub-class
LOC_Os02g09960OsAffx.24179.1.S1_x_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09960Os.4253.1.S1_s_at11/112+5179778..5182007Protein kinase domain containing protein, expressed
LOC_Os02g09970Os.55985.1.S1_at9/112+5183577..5184377expressed protein
LOC_Os02g09980Os.55519.1.S1_x_at1/112+5188958..5189776expressed protein
LOC_Os02g09990Os.55519.1.S1_x_at8/112+5194534..5195287expressed protein
LOC_Os02g09990Os.55519.1.S1_at6/112+5194534..5195287expressed protein
LOC_Os02g10000OsAffx.2561.1.S1_at10/112+5202091..5204588expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24179.1.S1_x_at--272--1711Chr02:5181263..5181287 (25 bp)
ACCAACCCGCCATGTGTGCACAAGA
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--1015--2611Chr02:5181266..5181290 (25 bp)
AACCCGCCATGTGTGCACAAGAACA
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--1089--1791Chr02:5181267..5181291 (25 bp)
ACCCGCCATGTGTGCACAAGAACAT
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--692--4211Chr02:5181269..5181293 (25 bp)
CCGCCATGTGTGCACAAGAACATCA
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--407--4431Chr02:5181271..5181295 (25 bp)
GCCATGTGTGCACAAGAACATCAAG
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--750--5831Chr02:5181320..5181344 (25 bp)
GACCTCCACGGCAAGATGTCCAGCT
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--1059--1751Chr02:5181321..5181345 (25 bp)
ACCTCCACGGCAAGATGTCCAGCTT
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--319--1611Chr02:5181399..5181423 (25 bp)
AGCTGACGCGCCACGTCGTGGGCAC
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--1008--7191Chr02:5181413..5181437 (25 bp)
GTCGTGGGCACCCAGGGCTACCTCT
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--541--371Chr02:5181464..5181488 (25 bp)
ATCACGCCCAAGCTCGACGTGTTCG
LOC_Os02g09960
OsAffx.24179.1.S1_x_at--1133--2571Chr02:5181629..5181653 (25 bp)
AACGTGCGCGCGTTCATGGACCCGC
LOC_Os02g09960
Target Sequence 
ACCAACCCGCCATGTGTGCACAAGAACATCAAGAGCAGCAACATCCTCCTCGACGCCGACCTCCACGGCAAGATGTCCAG
CTTCGGGCTAGCCCGCGCGCTCCCCGCGGGCGACGGCGCCGCCGCCGCCGCCGCGCAGCTGACGCGCCACGTCGTGGGCA
CCCAGGGCTACCTCTCCCCGGAGTACCTCGAGCACGGCCTCATCACGCCCAAGCTCGACGTGTTCGCCTTCGGCGTCGTC
CTCCTCGAGCTCCTCTCCGGCAAGGAGGCGGCGTCCTCCGGCGACGGCGAGAACGGCGAGGCGCTGCTGCTGTGGGAGTC
CGCGGCGGAGGCGCTCGTCGACGGCGGCGGCGAGGACGCGGGGAGCAACGTGCGCGCGTTCATGGACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24179.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis