Browse Element(s) Details


OsAffx.24202.1.S1_at

Description tigr:9630.m01084
TID=OsAffx.24202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1199010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g11940Os.18817.1.S1_at10/112+6188760..6193368sterol glucosyltransferase, putative, expressed
LOC_Os02g11950OsAffx.24201.1.S1_at11/112+6195010..6195441hypothetical protein
LOC_Os02g11960OsAffx.11993.1.S1_at11/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_s_at10/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11960OsAffx.11993.2.S1_at2/112+6197353..6204374ABC transporter family protein, putative
LOC_Os02g11970Os.10627.1.S1_a_at11/112+6205390..6207340expressed protein
LOC_Os02g11980OsAffx.24926.1.S1_x_at11/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11980OsAffx.24926.2.S1_at2/112+6208684..6212210Leucine Rich Repeat family protein, expressed
LOC_Os02g11990OsAffx.24202.1.S1_at10/112+6215998..6219187hypothetical protein
LOC_Os02g12000OsAffx.11994.1.S1_at11/112+6222957..6223378hypothetical protein
LOC_Os02g12010OsAffx.24926.2.S1_at11/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12010OsAffx.24926.1.S1_x_at6/112+6228456..6231985Leucine Rich Repeat family protein
LOC_Os02g12020OsAffx.24203.1.S1_at11/112+6236706..6237184hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24202.1.S1_at--996--10091Chr02:6218567..6218591 (25 bp)
TATGGCAACTATGACTCTCCTCGCG
LOC_Os02g11990
OsAffx.24202.1.S1_at--160--2151Chr02:6218196..6218220 (25 bp)
ACAGCTATGAATATGCGGGATCGCA
LOC_Os02g11990
OsAffx.24202.1.S1_at--531--7371Chr02:6218136..6218160 (25 bp)
GTGACGGCGAAGATGCCATGGCTAT
LOC_Os02g11990
OsAffx.24202.1.S1_at--273--3011NONE
AATGACGATTATGCCATTTCTGCCA
NONE
OsAffx.24202.1.S1_at--422--2851Chr02:6216959..6216983 (25 bp)
AAGTCTGTCGAGCTACTGATGGGCA
LOC_Os02g11990
OsAffx.24202.1.S1_at--794--832Chr02:6216922..6216946 (25 bp)
ATGGAGGCCATCATCGTCTCTTAGC
LOC_Os02g11990
OsAffx.24202.1.S1_at--781--9751Chr02:6216895..6216919 (25 bp)
TAAGCAAATCAACACGGTCTCCTCG
LOC_Os02g11990
OsAffx.24202.1.S1_at--329--5252Chr02:6216871..6216895 (25 bp)
GAATCCTACTCCATGAGAACTGGGA
LOC_Os02g11990
OsAffx.24202.1.S1_at--520--9871Chr02:6216091..6216115 (25 bp)
TACAGAGCTCGGATGGTTGTCCACC
LOC_Os02g11990
OsAffx.24202.1.S1_at--639--6631Chr02:6216076..6216100 (25 bp)
GTTGTCCACCAACCTACATAGGAGT
LOC_Os02g11990
OsAffx.24202.1.S1_at--373--3411Chr02:6216030..6216054 (25 bp)
CAGAGGTGGATTGGAACGTCCCCGC
LOC_Os02g11990
Target Sequence 
TATGGCAACTATGACTCTCCTCGCGCATGCGCCGACGGAGGCCAAGGAGGAGGCACACCCTAGAGGTGGCCGAGGAGGAG
CTCTTTGCCGCCGCATCTGCCGGTGCGTGATGGAGGTGTATCTGGAGTTGGGGATGGAGCTGGTGGTGGATACGGGGAGT
ATTGCCGTTGGCGCTGCCCGTGATGCAAACGCCGCAGCGCTACCATCGCCGACAGCTATGAATATGCGGGATCGCATTGC
TGATGGCAAGCTGAGGAGCGTGGCACTAGCAGTGACGGCGAAGATGCCATGGCTATGGGCAATGACGATTATGCCATTTC
TGCCATGTACGCTCGCCACCGGAAGCAAGTCTGTCGAGCTACTGATGGGCAGGGAGACGCATCATGGAGGCCATCATCGT
CTCTTAGCTCTAAGCAAATCAACACGGTCTCCTCGAATCCTACTCCATGAGAACTGGGACGGGCCGGGAATTACAGATGT
AGATACAGAGCTCGGATGGTTGTCCACCAACCTACATAGGAGTAGGGGTGACAACGGGGTAGGGCAGAGGTGGATTGGAA
CGTCCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis