Browse Element(s) Details


OsAffx.24236.1.S1_at

Description tigr:9630.m01283
TID=OsAffx.24236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1388011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g13850Os.27983.1.S2_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.27983.1.S1_at11/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.8723.1.S1_at2/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.8413.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.21108.1.S1_x_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850Os.54405.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13850OsAffx.16280.1.S1_at1/112+7501363..7513594Leucine Rich Repeat family protein, expressed
LOC_Os02g13860OsAffx.2602.2.S1_at11/112+7513963..7514649hypothetical protein
LOC_Os02g13870Os.2678.1.S1_at11/112+7516220..7519336Aquaporin NIP1.2, putative, expressed
LOC_Os02g13880OsAffx.24236.1.S1_at11/112+7524306..7524563expressed protein
LOC_Os02g13890Os.20210.1.S1_at11/112+7542597..7547070zinc finger family protein, putative, expressed
LOC_Os02g13900OsAffx.24237.2.S1_at10/112+7548571..7551644expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24236.1.S1_at--1009--4831Chr02:7524497..7524521 (25 bp)
GCTACGAGAATGATGGTGACCCCAA
LOC_Os02g13880
OsAffx.24236.1.S1_at--144--5251Chr02:7524490..7524514 (25 bp)
GAATGATGGTGACCCCAACCACGTA
LOC_Os02g13880
OsAffx.24236.1.S1_at--18--8911Chr02:7524481..7524505 (25 bp)
TGACCCCAACCACGTACAACGATGA
LOC_Os02g13880
OsAffx.24236.1.S1_at--493--4331Chr02:7524472..7524496 (25 bp)
CCACGTACAACGATGACCGCGAGGG
LOC_Os02g13880
OsAffx.24236.1.S1_at--972--7691Chr02:7524449..7524473 (25 bp)
GGGTCATCCACATACTGTGGTGGTG
LOC_Os02g13880
OsAffx.24236.1.S1_at--931--3531Chr02:7524445..7524469 (25 bp)
CATCCACATACTGTGGTGGTGGGTA
LOC_Os02g13880
OsAffx.24236.1.S1_at--657--7491Chr02:7524427..7524451 (25 bp)
GTGGGTATAACAGGTTGCCAGATCT
LOC_Os02g13880
OsAffx.24236.1.S1_at--454--6691Chr02:7524414..7524438 (25 bp)
GTTGCCAGATCTGGCGATTGCGATT
LOC_Os02g13880
OsAffx.24236.1.S1_at--316--7591Chr02:7524374..7524398 (25 bp)
GGGCTAGTATGCAGCTCCAATTCTA
LOC_Os02g13880
OsAffx.24236.1.S1_at--382--4391Chr02:7524358..7524382 (25 bp)
CCAATTCTAGGAGCTCAGGTGATGA
LOC_Os02g13880
OsAffx.24236.1.S1_at--534--5911Chr02:7524348..7524372 (25 bp)
GAGCTCAGGTGATGACGACGGATCT
LOC_Os02g13880
Target Sequence 
GCTACGAGAATGATGGTGACCCCAACCACGTACAACGATGACCGCGAGGGGTCATCCACATACTGTGGTGGTGGGTATAA
CAGGTTGCCAGATCTGGCGATTGCGATTGGGGAGGGGGGATGGGGGCTAGTATGCAGCTCCAATTCTAGGAGCTCAGGTG
ATGACGACGGATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis