Browse Element(s) Details


OsAffx.2425.1.S1_at

Description gb:NM_190245.1
DB_XREF= gi:34907573
GEN=B1078G07.28
TID=OsAffx.2425.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1078G07.28 (B1078G07.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g069901/11expressed protein
LOC_Os01g669101/11hypothetical protein
LOC_Os10g053901/11hypothetical protein
LOC_Os03g253641/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06960Os.53842.1.S1_x_at1/1111+3448504..3452746retrotransposon protein, putative, unclassified
LOC_Os11g06970NANA11+3454730..3455188retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g06980Os.27795.1.S1_at11/1111+3459814..3463905BURP domain containing protein, expressed
LOC_Os11g06990OsAffx.9335.2.S1_at11/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.28346.1.S1_x_at4/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.24157.1.A1_at2/1111+3468895..3473462expressed protein
LOC_Os11g06990OsAffx.2425.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g06990Os.46020.1.S1_at1/1111+3468895..3473462expressed protein
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2425.1.S1_at--545--10556Chr10:17197526..17197546 (21 bp)
TTCGCAACGGGTTTCACGAGGGTTG
NONE
OsAffx.2425.1.S1_at--603--7671Chr01:39188010..39188034 (25 bp)
GGGTTGCGTGCAAGCGTTGGTGTTC
NONE
OsAffx.2425.1.S1_at--1075--6611Chr01:39187995..39188019 (25 bp)
GTTGGTGTTCGCGAAGGAAATTGAT
NONE
OsAffx.2425.1.S1_at--704--5511Chr01:39187954..39187978 (25 bp)
GAAAAGATGTGCCACAGTACACGTG
NONE
OsAffx.2425.1.S1_at--370--6272Chr06:19166156..19166177 (22 bp)
GATGTGCCACAGTACACGTGGTACT
NONE
OsAffx.2425.1.S1_at--806--1178Chr10:2641812..2641832 (21 bp)
AGTACACGTGGTACTGTAGCAGGGC
LOC_Os10g05390
OsAffx.2425.1.S1_at--343--10011NONE
TAGCAGGGCTGCACGTGGGCGGTTC
NONE
OsAffx.2425.1.S1_at--1146--1071NONE
AGGGCTGCACGTGGGCGGTTCGACC
NONE
OsAffx.2425.1.S1_at--758--3531Chr01:39187070..39187273 (25 bp)
CATCGACTTCGTTTGGGCGGCGGAA
NONE
OsAffx.2425.1.S1_at--384--4691Chr01:39187051..39187075 (25 bp)
GCGGAAGCCACCATGGCCCGTGTCA
NONE
OsAffx.2425.1.S1_at--881--4959Chr12:15803605..15803710 (25 bp)
GCATCCGTCACAGTAAAGCCCGTCA
NONE
Target Sequence 
TTCGCAACGGGTTTCACGAGGGTTGCGTGCAAGCGTTGGTGTTCGCGAAGGAAATTGATGAAGAAATTGGAAGGAGAAAA
GATGTGCCACAGTACACGTGGTACTGTAGCAGGGCTGCACGTGGGCGGTTCGACCGGCGGCGACTGGACTTCGTCATCGA
CTTCGTTTGGGCGGCGGAAGCCACCATGGCCCGTGTCACGGCGGTCGGAGATGGGTACGAGTACGACGGGGTGGTCGTCG
GCCATCCAGTGATCCAATTCGGCGATGGGGCGCCGCCGGCCGTCGTTGGTTACCCGCTGCCAAAGGAGCCGCCGCCACCA
CCGCCGCCGGCGACATTGCAACGAGGACGCCCCGAGCAGCGGTGCTCCTCCCGCTGCGGGCCCTGCGAGATATTCACAGT
GACATTTATGGTTGTCGTCGCGGTCGAATCGTTAACTTACTTCCTCCTCGCCATGATTGGCATGGCATCCGTCACAGTAA
AGCCCGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2425.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis