Browse Element(s) Details


OsAffx.24266.1.S1_at

Description tigr:9630.m01420
TID=OsAffx.24266.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1520011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g15160Os.54642.1.S1_at9/112+8453871..8455935F-box domain containing protein, expressed
LOC_Os02g15169Os.11489.3.S1_x_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.1.S1_a_at11/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.11489.4.S1_x_at7/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169Os.15950.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15169OsAffx.2517.1.S1_at1/112+8458547..8460632Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.1.S1_a_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.3.S1_x_at11/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178Os.11489.4.S1_x_at7/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15178OsAffx.2517.1.S1_at1/112+8465107..8467604Glutelin type-B 1 precursor, putative, expressed
LOC_Os02g15190NANA2+8470287..8473936retrotransposon protein, putative, unclassified
LOC_Os02g15200OsAffx.24266.1.S1_at11/112+8479274..8479606hypothetical protein
LOC_Os02g15210NANA2+8481007..8481772hypothetical protein
LOC_Os02g15220Os.7796.1.S1_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_a_at11/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15220Os.7796.2.S1_at3/112+8490617..8498387Bromodomain containing protein, expressed
LOC_Os02g15230Os.7804.1.S1_at11/112+8501518..8504975GDSL-like Lipase/Acylhydrolase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24266.1.S1_at--297--1731Chr02:8479389..8479413 (25 bp)
ACCATCGCCGGCTTCACGACATGGT
LOC_Os02g15200
OsAffx.24266.1.S1_at--747--531Chr02:8479392..8479416 (25 bp)
ATCGCCGGCTTCACGACATGGTCGC
LOC_Os02g15200
OsAffx.24266.1.S1_at--541--3931Chr02:8479473..8479497 (25 bp)
CGGCGAGGACTAGCGGCACGGCGGT
LOC_Os02g15200
OsAffx.24266.1.S1_at--638--1611Chr02:8479484..8479508 (25 bp)
AGCGGCACGGCGGTCGAAACAGTAT
LOC_Os02g15200
OsAffx.24266.1.S1_at--455--4691Chr02:8479485..8479509 (25 bp)
GCGGCACGGCGGTCGAAACAGTATT
LOC_Os02g15200
OsAffx.24266.1.S1_at--225--8251Chr02:8479487..8479511 (25 bp)
GGCACGGCGGTCGAAACAGTATTGC
LOC_Os02g15200
OsAffx.24266.1.S1_at--853--7791Chr02:8479495..8479519 (25 bp)
GGTCGAAACAGTATTGCCGCGGCAG
LOC_Os02g15200
OsAffx.24266.1.S1_at--1067--7211Chr02:8479496..8479520 (25 bp)
GTCGAAACAGTATTGCCGCGGCAGC
LOC_Os02g15200
OsAffx.24266.1.S1_at--172--4111Chr02:8479498..8479522 (25 bp)
CGAAACAGTATTGCCGCGGCAGCGA
LOC_Os02g15200
OsAffx.24266.1.S1_at--230--2411Chr02:8479500..8479524 (25 bp)
AAACAGTATTGCCGCGGCAGCGAGA
LOC_Os02g15200
OsAffx.24266.1.S1_at--186--2791Chr02:8479533..8479557 (25 bp)
AAGAGATTGACGAGACGGTTTACGA
LOC_Os02g15200
Target Sequence 
ACCATCGCCGGCTTCACGACATGGTCGCCGCCGCCGTCGTCAGTCAACCCCCGCCGCGGCCGCCGCCGCCAGCTGCGCCG
GCCGCGGCGAGGACTAGCGGCACGGCGGTCGAAACAGTATTGCCGCGGCAGCGAGATGATGGAGAAGAGATTGACGAGAC
GGTTTACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24266.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis