Browse Element(s) Details


OsAffx.24284.5.A1_at

Description tigr:9630.m01571
TID=OsAffx.24284.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to alpha-expansin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g132101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13170NANA8+7818798..7826235retrotransposon protein, putative, unclassified
LOC_Os08g13180OsAffx.16974.1.S1_at11/118+7828453..7829607BTB/POZ domain containing protein
LOC_Os08g13190Os.49232.1.S1_x_at2/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190Os.45982.1.A1_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13190OsAffx.18435.1.S1_x_at1/118+7834691..7837635retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g13200NANA8+7839612..7840385hypothetical protein
LOC_Os08g13210OsAffx.24284.5.A1_at1/118+7848746..7851377hypothetical protein
LOC_Os08g13219OsAffx.26691.1.S1_at4/118+7854708..7855378hypothetical protein
LOC_Os08g13230OsAffx.5801.1.S1_at11/118+7857946..7858422hypothetical protein
LOC_Os08g13240Os.40360.1.S1_x_at1/118+7862515..7863765hypothetical protein
LOC_Os08g13250OsAffx.29176.1.S1_at11/118+7872886..7875334BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24284.5.A1_at--692--172Chr02:9589467..9589491 (25 bp)
ATTTTCATATGGAAGCAGCGGTCAG
NONE
OsAffx.24284.5.A1_at--368--5072Chr02:9589481..9589505 (25 bp)
GCAGCGGTCAGGATATGCACTGTTC
NONE
OsAffx.24284.5.A1_at--837--3332Chr02:9589498..9589522 (25 bp)
CACTGTTCTCTCCATAATGTCCAAA
NONE
OsAffx.24284.5.A1_at--1132--8033Chr08:7851042..7851097 (24 bp)
GGAGTATTTGTATTGGTACCTTTGA
LOC_Os08g13210
OsAffx.24284.5.A1_at--517--292Chr02:9589553..9589577 (25 bp)
ATAGATGACCGGTATGATGCCTGCG
NONE
OsAffx.24284.5.A1_at--961--8852Chr02:9589567..9589591 (25 bp)
TGATGCCTGCGCTGTAGACGCCGAT
NONE
OsAffx.24284.5.A1_at--281--4492Chr02:9589602..9589626 (25 bp)
GCCGGCTGTGCCATGTCAAAGTGCG
NONE
OsAffx.24284.5.A1_at--1125--3372Chr02:9589644..9589668 (25 bp)
CAGCCACCATTATCACTGGGAAGGT
NONE
OsAffx.24284.5.A1_at--105--7815Chr02:9600929..9600953 (25 bp)
GGTCGCAGGCGATCTTGTAGCACTG
NONE
OsAffx.24284.5.A1_at--435--9152Chr02:9589836..9589860 (25 bp)
TGCGAGTACAGGTTGCCGTATCCGC
NONE
OsAffx.24284.5.A1_at--920--6934Chr02:9589898..9589922 (25 bp)
GTAGAACGTCGCGTGCGCCTTCTGC
NONE
Target Sequence 
ATTTTCATATGGAAGCAGCGGTCAGGATATGCACTGTTCTCTCCATAATGTCCAAAATAATTGGAGTATTTGTATTGGTA
CCTTTGATAGATGACCGGTATGATGCCTGCGCTGTAGACGCCGATCTTCTCCCAGGCCGGCTGTGCCATGTCAAAGTGCG
GCCGTGGTGGGTTGCACCAGCCACCATTATCACTGGGAAGGTTCCAGTTGGGCGGGCAGAAATTGGTGGCGGTGATGGTA
ACGGTGACGCCGGGCTTGCACCACTGCGGCGCCCTCTTGCGGTCGCAGGCGATCTTGTAGCACTGCCCGCACGACGCGCC
GTCGTTGAACAGCGCCGTGCTCAGCGCCGCGTTCCGCGTGCCGTACCCCTGCGAGTACAGGTTGCCGTATCCGCACGCCC
CGCCCATGGTGCCCGACGCGTCCGCGCCGCCGTAGAACGTCGCGTGCGCCTTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24284.5.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis