Browse Element(s) Details


OsAffx.2430.1.S1_at

Description tigr:9629.m06739
TID=OsAffx.2430.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SRF-type transcription factor (DNA-binding and dimerisation domain), putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6789011/11SRF-type transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67860Os.8999.3.S1_x_at10/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67860Os.8999.1.S1_at8/111+39760231..39762558Fructose-bisphosphate aldolase, cytoplasmic isozyme, putative, expressed
LOC_Os01g67870Os.50939.1.S1_at9/111+39764817..39769722expressed protein
LOC_Os01g67870OsAffx.17910.1.S1_at1/111+39764817..39769722expressed protein
LOC_Os01g67880OsAffx.23963.1.S1_x_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67880Os.54646.1.S1_at11/111+39776545..39781580membrane trafficking VPS53 family protein, putative, expressed
LOC_Os01g67890OsAffx.2430.1.S1_at11/111+39786448..39787899SRF-type transcription factor family protein, expressed
LOC_Os01g67900NANA1+39790665..39791009hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_x_at8/111+39792113..39793197hypothetical protein
LOC_Os01g67910OsAffx.11783.1.S1_at5/111+39792113..39793197hypothetical protein
LOC_Os01g67920Os.21106.1.S1_at11/111+39794462..39800667TPR Domain containing protein, expressed
LOC_Os01g67930NANA1+39805154..39805511hypothetical protein
LOC_Os01g67940NANA1+39807522..39807902hypothetical protein
LOC_Os01g67950Os.38856.1.A1_s_at11/111+39810631..39811639ubiquitin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2430.1.S1_at--165--8491Chr01:39787001..39787025 (25 bp)
TGGCATTGCCGGACAACGCCTTCGA
LOC_Os01g67890
OsAffx.2430.1.S1_at--843--391Chr01:39786714..39786738 (25 bp)
ATCATGCACGGTGGCTCGACGGCTG
LOC_Os01g67890
OsAffx.2430.1.S1_at--793--9251Chr01:39786683..39786707 (25 bp)
TCCTCGACGATCATGGCCAGATCTT
LOC_Os01g67890
OsAffx.2430.1.S1_at--705--2031Chr01:39786629..39786653 (25 bp)
ACATTCTTGGGCACGGCTTCGGCTT
LOC_Os01g67890
OsAffx.2430.1.S1_at--235--4491Chr01:39786600..39786624 (25 bp)
GCCGGCACCGGGTACGATCTTGACC
LOC_Os01g67890
OsAffx.2430.1.S1_at--951--7831Chr01:39786590..39786614 (25 bp)
GGTACGATCTTGACCCGCGCATGGC
LOC_Os01g67890
OsAffx.2430.1.S1_at--1055--1791Chr01:39786564..39786588 (25 bp)
ACCGCCGACGTTTGGCCGATGAACA
LOC_Os01g67890
OsAffx.2430.1.S1_at--1150--8411Chr01:39786551..39786575 (25 bp)
GGCCGATGAACACGCTCAACAATAT
LOC_Os01g67890
OsAffx.2430.1.S1_at--477--3111Chr01:39786531..39786555 (25 bp)
AATATTCCAAACGATGGCGGCATCG
LOC_Os01g67890
OsAffx.2430.1.S1_at--671--8291Chr01:39786507..39786531 (25 bp)
GGCTTCCAGCTGCAGAACGATCTGA
LOC_Os01g67890
OsAffx.2430.1.S1_at--880--7511Chr01:39786481..39786505 (25 bp)
GTGGATGCTTCCAGGTGGTAGCAAC
LOC_Os01g67890
Target Sequence 
TGGCATTGCCGGACAACGCCTTCGACTTCCCGTTCGCCCCGTCGAACACCGGCCCCCGTCGTCGGCGCCCACTACTTCTA
CCCTCTCCACGACACCCTGCCGCTGCCGCTGCCGCTGCCACAGCAGGTTCCCGGCCAGCATCCGCCGTGCATCGCCTACC
AGATGCCGCCGCCGCCGTGCCTCGCCTATCAGATGCCGCCGCCGCCGCCGCCGTCGCTCGCCGCGGCGCCATTCGACCAG
TCAACCCTTACGCCACCCACATCATGCACGGTGGCTCGACGGCTGCTGGCCTCCTCGACGATCATGGCCAGATCTTCTCC
GCCGGCGCAGGGTACGACGACGACGACATTCTTGGGCACGGCTTCGGCTTCGCCGCCGGCACCGGGTACGATCTTGACCC
GCGCATGGCCACCGCCGACGTTTGGCCGATGAACACGCTCAACAATATTCCAAACGATGGCGGCATCGGCTTCCAGCTGC
AGAACGATCTGAAGTGGATGCTTCCAGGTGGTAGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis