Browse Element(s) Details


OsAffx.24310.1.S1_at

Description tigr:9630.m01763
TID=OsAffx.24310.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1862011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g18560NANA2+10827394..10831164retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18570Os.46862.1.S1_at5/112+10831878..10833756retrotransposon protein, putative, unclassified
LOC_Os02g18580OsAffx.30582.1.S1_s_at10/112+10836766..10837275hypothetical protein
LOC_Os02g18590Os.55650.1.A1_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22385.1.S1_x_at7/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.21756.5.A1_x_at5/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.52979.1.S1_at4/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.20329.1.S1_at2/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590Os.22646.1.S1_x_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18590OsAffx.22143.1.S1_at1/112+10837757..10843637retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g18600OsAffx.11549.1.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18600OsAffx.31811.4.S1_at1/112+10846039..10848189transposon protein, putative, unclassified
LOC_Os02g18610OsAffx.12103.1.S1_at11/112+10849474..10850435hypothetical protein
LOC_Os02g18610OsAffx.26471.1.S1_at1/112+10849474..10850435hypothetical protein
LOC_Os02g18620OsAffx.24310.1.S1_at11/112+10854612..10855586hypothetical protein
LOC_Os02g18630Os.54656.1.S1_at11/112+10857584..10859010F-box domain containing protein, expressed
LOC_Os02g18640Os.56259.1.S1_at11/112+10861340..10862860F-box domain containing protein, expressed
LOC_Os02g18650Os.54891.1.S1_at11/112+10864067..10867220Pectinesterase-2 precursor, putative, expressed
LOC_Os02g18660Os.6598.1.S1_at11/112+10870288..10874504expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24310.1.S1_at--456--2931Chr02:10855072..10855096 (25 bp)
AAGGCAAGCTATACGTCCTGGGCAT
LOC_Os02g18620
OsAffx.24310.1.S1_at--245--991Chr02:10855177..10855201 (25 bp)
AGGAGGACGGAGACCTCGACCTGTT
LOC_Os02g18620
OsAffx.24310.1.S1_at--476--7091Chr02:10855221..10855245 (25 bp)
GTCAACCTCATCCATGTCAATGGGT
LOC_Os02g18620
OsAffx.24310.1.S1_at--42--7091Chr02:10855236..10855260 (25 bp)
GTCAATGGGTTTCAAGCTCGTCTCT
LOC_Os02g18620
OsAffx.24310.1.S1_at--326--2071Chr02:10855327..10855351 (25 bp)
ACATTGGTGTTCGTCGAGGGTTCGA
LOC_Os02g18620
OsAffx.24310.1.S1_at--1037--6111Chr02:10855342..10855366 (25 bp)
GAGGGTTCGATCACCTCGCGAAGGT
LOC_Os02g18620
OsAffx.24310.1.S1_at--1133--4091Chr02:10855418..10855442 (25 bp)
CGACTGCGAGTTCATGTTCTTGTGC
LOC_Os02g18620
OsAffx.24310.1.S1_at--933--4631Chr02:10855441..10855465 (25 bp)
GCGTTGATGGCGATGTGCTGTACAT
LOC_Os02g18620
OsAffx.24310.1.S1_at--150--5351Chr02:10855490..10855514 (25 bp)
GAAGATTTTCAAGGCGTCACCGAAG
LOC_Os02g18620
OsAffx.24310.1.S1_at--214--991Chr02:10855517..10855541 (25 bp)
AGGAGGTGTTCTGCCAGTGATCCAT
LOC_Os02g18620
OsAffx.24310.1.S1_at--694--1111Chr02:10855532..10855556 (25 bp)
AGTGATCCATCCACTGACCATGGTT
LOC_Os02g18620
Target Sequence 
AAGGCAAGCTATACGTCCTGGGCATGCAGTCCCACGCCATTCTTGTGCTCGACCTGGCATCCATGGCCACCTCCTTCATC
AACCTCCCCGACGGAGTGCGCCACGAGGAGGACGGAGACCTCGACCTGTTCCGGTCAAACGACGCCGGCGTCAACCTCAT
CCATGTCAATGGGTTTCAAGCTCGTCTCTGGCGTCGCGGTGGCGACGACGATGACGGCGACGGCATGACAGCGGGCAATT
GGGTGTTGGTGGACGACATTGGTGTTCGTCGAGGGTTCGATCACCTCGCGAAGGTTGGCGGGGAGATGGACATTGGTGGT
CCGGTTGGGGTTATCAAGGTCGGCGACGACTGCGAGTTCATGTTCTTGTGCGTTGATGGCGATGTGCTGTACATGGATAT
CAGGACGAGGATGGTGAAGAAGATTTTCAAGGCGTCACCGAAGAGAGGAGGTGTTCTGCCAGTGATCCATCCACTGACCA
TGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24310.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis