Browse Element(s) Details


OsAffx.24324.1.S1_at

Description tigr:9630.m01849
TID=OsAffx.24324.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=microfibril-associated protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1938010/11microfibril-associated protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g19330Os.27045.1.S1_a_at11/112+11292717..11300266expressed protein
LOC_Os02g19340NANA2+11301327..11301638hypothetical protein
LOC_Os02g19350NANA2+11305198..11308941hypothetical protein
LOC_Os02g19360NANA2+11309095..11310567hypothetical protein
LOC_Os02g19370NANA2+11312071..11313481hypothetical protein
LOC_Os02g19380OsAffx.24324.1.S1_at10/112+11316688..11318611microfibril-associated protein, putative
LOC_Os02g19390OsAffx.20729.1.S1_x_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19390OsAffx.1674.1.S1_at1/112+11326851..11329119retrotransposon protein, putative, unclassified
LOC_Os02g19400OsAffx.20380.1.S1_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.20380.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19400OsAffx.22927.1.S1_x_at1/112+11329784..11333177retrotransposon protein, putative, unclassified, expressed
LOC_Os02g19410OsAffx.12120.1.S1_at11/112+11335644..11337705hypothetical protein
LOC_Os02g19420Os.13737.1.S1_s_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed
LOC_Os02g19420OsAffx.12121.1.S1_at11/112+11339975..11344905Cell differentiation protein rcd1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24324.1.S1_at--698--3211Chr02:11318069..11318093 (25 bp)
CAAGGAGGAAGAACGGCAGCGACTT
LOC_Os02g19380
OsAffx.24324.1.S1_at--705--9331Chr02:11317956..11317980 (25 bp)
TCGCCGCCAACACAGCTTCAGATGA
LOC_Os02g19380
OsAffx.24324.1.S1_at--525--4031Chr02:11317803..11317827 (25 bp)
CGATCATGGAAGACGAGAACCCGGT
LOC_Os02g19380
OsAffx.24324.1.S1_at--148--6311Chr02:11317739..11317763 (25 bp)
GATGAGGTTCATGCAAAGATACTAC
LOC_Os02g19380
OsAffx.24324.1.S1_at--690--2811Chr02:11317724..11317748 (25 bp)
AAGATACTACCACAAGGGCTGCTTC
LOC_Os02g19380
OsAffx.24324.1.S1_at--731--5731Chr02:11317670..11317694 (25 bp)
GACGGCAGGATCATGCGAAATCTAC
LOC_Os02g19380
OsAffx.24324.1.S1_at--938--2792Chr02:11187697..11187748 (25 bp)
AAGATGGACGTGAAGCACTTTGGGC
NONE
OsAffx.24324.1.S1_at--1111--8092Chr02:11187767..11187791 (25 bp)
GGACGCATCTAGTTAACGAGGACAC
NONE
OsAffx.24324.1.S1_at--528--2572Chr02:11187781..11187802 (22 bp)
AACGAGGACACCACGTACAGGACAC
NONE
OsAffx.24324.1.S1_at--804--9871Chr02:11317153..11317537 (25 bp)
TACAGGACACCACGTACGGGAGACA
LOC_Os02g19380
OsAffx.24324.1.S1_at--1086--3331NONE
CACGTACGGGAGACAACAATGCATC
NONE
Target Sequence 
CAAGGAGGAAGAACGGCAGCGACTTGAGGACGAGCTGCACCGGAAGAGGCTCGAGGACAGGAAGGCTCAGACGAGGCAGA
TCCTGCTCCAAGAGATCATCAACGAAGAGCTCCTCGCCGCCAACACAGCTTCAGATGAAGCCGCCATCAACGGCGTGGAC
ACCGACGACGAGGTGGACCAAGCCGAGGAGTACGAGTCGTGGCGGCGCCGGGAGATGGCGAGGATCAAGAGGATCAGGGA
GGAGAGCGGCATCGACGACGACAAGTCGATCATGGAAGACGAGAACCCGGTTGCTGATCGTCCCAAGAAGAAGATGAAGA
TCAAGAAGCAGATGAGGTTCATGCAAAGATACTACCACAAGGGCTGCTTCTTCCAACAAGACGCCGACGATGCGGCGCAG
ACGGCAGGATCATGCGAAATCTACCGGCGAGATTTCTCCGGGCCGACCGGGTTGGACAAGATGGACGTGAAGCACTTTGG
GCGGCGTGGGGGAAGGAAGTGGACGCATCTAGTTAACGAGGACACCACGTACAGGACACCACGTACGGGAGACAACAATG
CATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis